Strain Fitness in Pseudomonas simiae WCS417 around PS417_14725

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14715 and PS417_14720 are separated by 134 nucleotidesPS417_14720 and PS417_14725 are separated by 52 nucleotidesPS417_14725 and PS417_14730 overlap by 1 nucleotides PS417_14715: PS417_14715 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 3,212,739 to 3,214,226 _14715 PS417_14720: PS417_14720 - MarR family transcriptional regulator, at 3,214,361 to 3,214,774 _14720 PS417_14725: PS417_14725 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 3,214,827 to 3,215,189 _14725 PS417_14730: PS417_14730 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 3,215,189 to 3,217,729 _14730 Position (kb) 3214 3215 3216Strain fitness (log2 ratio) -2 -1 0 1at 3214.201 kb on - strandat 3214.341 kb on + strandat 3214.342 kb on - strandat 3214.342 kb on - strandat 3214.782 kb on + strandat 3214.783 kb on - strandat 3214.937 kb on + strand, within PS417_14725at 3214.938 kb on - strand, within PS417_14725at 3214.939 kb on + strand, within PS417_14725at 3214.974 kb on - strand, within PS417_14725at 3214.974 kb on - strand, within PS417_14725at 3215.038 kb on + strand, within PS417_14725at 3215.039 kb on - strand, within PS417_14725at 3215.039 kb on - strand, within PS417_14725at 3215.069 kb on - strand, within PS417_14725at 3215.515 kb on - strand, within PS417_14730at 3215.539 kb on - strand, within PS417_14730at 3215.620 kb on - strand, within PS417_14730at 3215.648 kb on + strand, within PS417_14730at 3215.740 kb on - strand, within PS417_14730at 3215.961 kb on + strand, within PS417_14730at 3215.990 kb on + strand, within PS417_14730

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,214,201 - +0.8
3,214,341 + -2.1
3,214,342 - -0.4
3,214,342 - -0.6
3,214,782 + +1.1
3,214,783 - -0.2
3,214,937 + PS417_14725 0.30 -0.1
3,214,938 - PS417_14725 0.31 -0.4
3,214,939 + PS417_14725 0.31 -1.5
3,214,974 - PS417_14725 0.40 -1.7
3,214,974 - PS417_14725 0.40 -0.1
3,215,038 + PS417_14725 0.58 -1.8
3,215,039 - PS417_14725 0.58 -1.5
3,215,039 - PS417_14725 0.58 -2.5
3,215,069 - PS417_14725 0.67 -1.4
3,215,515 - PS417_14730 0.13 -0.5
3,215,539 - PS417_14730 0.14 -1.7
3,215,620 - PS417_14730 0.17 -1.7
3,215,648 + PS417_14730 0.18 -0.4
3,215,740 - PS417_14730 0.22 -0.4
3,215,961 + PS417_14730 0.30 -1.4
3,215,990 + PS417_14730 0.32 -1.2

Or see this region's nucleotide sequence