Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06000 and PS417_06005 are separated by 83 nucleotides PS417_06005 and PS417_06010 are separated by 106 nucleotides PS417_06010 and PS417_06015 are separated by 146 nucleotides
PS417_06000: PS417_06000 - peptide chain release factor 2, at 1,333,967 to 1,334,848
_06000
PS417_06005: PS417_06005 - lysyl-tRNA synthetase, at 1,334,932 to 1,336,431
_06005
PS417_06010: PS417_06010 - TetR family transcriptional regulator, at 1,336,538 to 1,337,254
_06010
PS417_06015: PS417_06015 - hypothetical protein, at 1,337,401 to 1,337,949
_06015
Position (kb)
1334
1335
1336
1337 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1334.846 kb on + strand at 1334.854 kb on + strand at 1334.854 kb on + strand at 1334.854 kb on + strand at 1334.854 kb on + strand at 1336.459 kb on - strand at 1336.459 kb on - strand at 1336.459 kb on - strand at 1336.520 kb on + strand at 1336.520 kb on + strand at 1336.521 kb on - strand at 1336.760 kb on + strand, within PS417_06010 at 1336.760 kb on + strand, within PS417_06010 at 1336.880 kb on + strand, within PS417_06010 at 1336.946 kb on + strand, within PS417_06010 at 1336.946 kb on + strand, within PS417_06010 at 1336.946 kb on + strand, within PS417_06010 at 1336.947 kb on - strand, within PS417_06010 at 1337.160 kb on - strand, within PS417_06010 at 1337.225 kb on + strand at 1337.274 kb on + strand at 1337.274 kb on + strand at 1337.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,334,846 + -0.2 1,334,854 + -0.4 1,334,854 + +0.5 1,334,854 + +1.5 1,334,854 + +2.0 1,336,459 - -0.6 1,336,459 - -0.3 1,336,459 - -2.2 1,336,520 + +0.1 1,336,520 + -0.8 1,336,521 - -0.1 1,336,760 + PS417_06010 0.31 -0.0 1,336,760 + PS417_06010 0.31 -0.4 1,336,880 + PS417_06010 0.48 -0.0 1,336,946 + PS417_06010 0.57 -0.1 1,336,946 + PS417_06010 0.57 -0.9 1,336,946 + PS417_06010 0.57 -0.6 1,336,947 - PS417_06010 0.57 +0.3 1,337,160 - PS417_06010 0.87 -2.0 1,337,225 + +0.6 1,337,274 + -0.5 1,337,274 + +0.8 1,337,424 - -0.0
Or see this region's nucleotide sequence