Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05990 and PS417_06000 are separated by 453 nucleotides PS417_06000 and PS417_06005 are separated by 83 nucleotides
PS417_05990: PS417_05990 - diguanylate cyclase, at 1,332,512 to 1,333,513
_05990
PS417_06000: PS417_06000 - peptide chain release factor 2, at 1,333,967 to 1,334,848
_06000
PS417_06005: PS417_06005 - lysyl-tRNA synthetase, at 1,334,932 to 1,336,431
_06005
Position (kb)
1333
1334
1335 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1332.991 kb on + strand, within PS417_05990 at 1333.064 kb on + strand, within PS417_05990 at 1333.148 kb on + strand, within PS417_05990 at 1333.149 kb on - strand, within PS417_05990 at 1333.149 kb on - strand, within PS417_05990 at 1333.357 kb on + strand, within PS417_05990 at 1333.357 kb on + strand, within PS417_05990 at 1333.469 kb on + strand at 1333.469 kb on + strand at 1333.469 kb on + strand at 1333.469 kb on + strand at 1333.469 kb on + strand at 1333.469 kb on + strand at 1333.470 kb on - strand at 1333.470 kb on - strand at 1333.470 kb on - strand at 1333.470 kb on - strand at 1333.483 kb on + strand at 1333.578 kb on + strand at 1333.578 kb on + strand at 1333.578 kb on + strand at 1333.578 kb on + strand at 1333.579 kb on - strand at 1333.579 kb on - strand at 1333.643 kb on + strand at 1333.655 kb on - strand at 1334.846 kb on + strand at 1334.854 kb on + strand at 1334.854 kb on + strand at 1334.854 kb on + strand at 1334.854 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,332,991 + PS417_05990 0.48 +1.9 1,333,064 + PS417_05990 0.55 +0.1 1,333,148 + PS417_05990 0.63 +1.0 1,333,149 - PS417_05990 0.64 +1.6 1,333,149 - PS417_05990 0.64 -0.4 1,333,357 + PS417_05990 0.84 -0.4 1,333,357 + PS417_05990 0.84 +3.2 1,333,469 + +1.6 1,333,469 + +1.0 1,333,469 + -0.5 1,333,469 + +1.4 1,333,469 + +0.4 1,333,469 + +0.7 1,333,470 - +0.1 1,333,470 - +1.0 1,333,470 - -0.1 1,333,470 - +0.3 1,333,483 + +0.4 1,333,578 + +0.4 1,333,578 + -2.0 1,333,578 + +0.1 1,333,578 + +0.4 1,333,579 - +0.3 1,333,579 - +1.4 1,333,643 + +0.5 1,333,655 - -0.4 1,334,846 + -0.2 1,334,854 + -0.4 1,334,854 + +0.5 1,334,854 + +1.5 1,334,854 + +2.0
Or see this region's nucleotide sequence