Strain Fitness in Pseudomonas simiae WCS417 around PS417_02680

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02675 and PS417_02680 are separated by 786 nucleotidesPS417_02680 and PS417_02685 are separated by 179 nucleotides PS417_02675: PS417_02675 - ABC transporter ATP-binding protein, at 612,335 to 613,051 _02675 PS417_02680: PS417_02680 - hypothetical protein, at 613,838 to 614,605 _02680 PS417_02685: PS417_02685 - cation diffusion facilitator family transporter, at 614,785 to 615,690 _02685 Position (kb) 613 614 615Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 613.049 kb on + strandat 613.050 kb on - strandat 613.117 kb on - strandat 613.237 kb on + strandat 613.237 kb on + strandat 613.237 kb on + strandat 613.238 kb on - strandat 613.238 kb on - strandat 613.238 kb on - strandat 613.238 kb on - strandat 613.239 kb on + strandat 613.240 kb on - strandat 613.430 kb on + strandat 613.430 kb on + strandat 613.430 kb on + strandat 613.430 kb on + strandat 613.431 kb on - strandat 613.431 kb on - strandat 613.431 kb on - strandat 613.432 kb on + strandat 613.432 kb on + strandat 613.433 kb on - strandat 613.443 kb on + strandat 613.443 kb on + strandat 613.444 kb on - strandat 613.444 kb on - strandat 613.477 kb on - strandat 613.556 kb on + strandat 613.556 kb on + strandat 613.556 kb on + strandat 613.560 kb on + strandat 613.560 kb on + strandat 613.560 kb on + strandat 613.560 kb on + strandat 613.561 kb on - strandat 613.561 kb on - strandat 613.619 kb on - strandat 613.638 kb on + strandat 613.638 kb on + strandat 613.639 kb on - strandat 613.686 kb on + strandat 613.855 kb on + strandat 613.856 kb on - strandat 614.106 kb on + strand, within PS417_02680at 614.267 kb on + strand, within PS417_02680at 614.291 kb on + strand, within PS417_02680at 614.291 kb on + strand, within PS417_02680at 614.292 kb on - strand, within PS417_02680at 614.439 kb on - strand, within PS417_02680at 614.451 kb on - strand, within PS417_02680at 614.603 kb on + strandat 614.603 kb on + strandat 614.603 kb on + strandat 614.604 kb on - strandat 614.604 kb on - strandat 614.604 kb on - strandat 614.718 kb on + strandat 614.718 kb on + strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.723 kb on + strandat 614.738 kb on - strandat 615.061 kb on + strand, within PS417_02685at 615.061 kb on + strand, within PS417_02685at 615.061 kb on + strand, within PS417_02685at 615.062 kb on - strand, within PS417_02685at 615.062 kb on - strand, within PS417_02685at 615.134 kb on - strand, within PS417_02685at 615.166 kb on + strand, within PS417_02685at 615.166 kb on + strand, within PS417_02685at 615.167 kb on - strand, within PS417_02685at 615.175 kb on + strand, within PS417_02685at 615.176 kb on - strand, within PS417_02685at 615.328 kb on + strand, within PS417_02685at 615.328 kb on + strand, within PS417_02685at 615.329 kb on - strand, within PS417_02685at 615.413 kb on + strand, within PS417_02685at 615.413 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.506 kb on - strand, within PS417_02685at 615.542 kb on + strand, within PS417_02685at 615.542 kb on + strand, within PS417_02685at 615.542 kb on + strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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613,049 + +0.5
613,050 - -0.4
613,117 - +1.1
613,237 + +0.5
613,237 + +2.2
613,237 + -0.6
613,238 - -0.7
613,238 - -1.1
613,238 - -0.7
613,238 - +0.7
613,239 + +0.3
613,240 - -0.4
613,430 + +0.8
613,430 + -2.1
613,430 + +1.4
613,430 + +0.5
613,431 - +0.7
613,431 - -1.0
613,431 - -1.4
613,432 + -2.8
613,432 + +0.1
613,433 - -0.3
613,443 + +1.2
613,443 + -0.4
613,444 - +0.2
613,444 - +0.1
613,477 - -0.3
613,556 + +0.3
613,556 + +0.2
613,556 + -0.3
613,560 + -1.5
613,560 + +0.4
613,560 + +0.2
613,560 + -1.9
613,561 - +0.0
613,561 - -0.7
613,619 - +0.2
613,638 + -0.5
613,638 + -0.4
613,639 - -0.4
613,686 + -1.6
613,855 + -0.5
613,856 - -0.0
614,106 + PS417_02680 0.35 -0.1
614,267 + PS417_02680 0.56 +1.4
614,291 + PS417_02680 0.59 +2.2
614,291 + PS417_02680 0.59 +0.2
614,292 - PS417_02680 0.59 +1.6
614,439 - PS417_02680 0.78 -0.1
614,451 - PS417_02680 0.80 -0.6
614,603 + +0.0
614,603 + +0.4
614,603 + -0.3
614,604 - -0.8
614,604 - -2.0
614,604 - +0.8
614,718 + -0.9
614,718 + -0.3
614,719 - -0.6
614,719 - +1.1
614,719 - -1.8
614,719 - +0.9
614,719 - -0.9
614,719 - +1.4
614,719 - -0.8
614,723 + +1.7
614,738 - -0.2
615,061 + PS417_02685 0.30 +0.1
615,061 + PS417_02685 0.30 -0.6
615,061 + PS417_02685 0.30 -0.2
615,062 - PS417_02685 0.31 +0.3
615,062 - PS417_02685 0.31 -0.8
615,134 - PS417_02685 0.39 +1.1
615,166 + PS417_02685 0.42 -1.1
615,166 + PS417_02685 0.42 +0.6
615,167 - PS417_02685 0.42 +0.2
615,175 + PS417_02685 0.43 +0.7
615,176 - PS417_02685 0.43 +0.9
615,328 + PS417_02685 0.60 -1.8
615,328 + PS417_02685 0.60 -1.2
615,329 - PS417_02685 0.60 -0.3
615,413 + PS417_02685 0.69 -1.8
615,413 + PS417_02685 0.69 +1.4
615,496 + PS417_02685 0.78 -0.1
615,496 + PS417_02685 0.78 +1.4
615,496 + PS417_02685 0.78 +0.4
615,496 + PS417_02685 0.78 -0.6
615,497 - PS417_02685 0.79 -0.4
615,497 - PS417_02685 0.79 +0.3
615,497 - PS417_02685 0.79 +0.0
615,497 - PS417_02685 0.79 -0.3
615,497 - PS417_02685 0.79 +0.0
615,506 - PS417_02685 0.80 -1.4
615,542 + PS417_02685 0.84 +0.1
615,542 + PS417_02685 0.84 -0.5
615,542 + PS417_02685 0.84 +0.2
615,543 - PS417_02685 0.84 +0.2
615,543 - PS417_02685 0.84 -0.0
615,543 - PS417_02685 0.84 +0.8
615,543 - PS417_02685 0.84 +0.2
615,543 - PS417_02685 0.84 +1.6

Or see this region's nucleotide sequence