Strain Fitness in Pseudomonas simiae WCS417 around PS417_23285

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23270 and PS417_23275 are separated by 458 nucleotidesPS417_23275 and PS417_23280 are separated by 10 nucleotidesPS417_23280 and PS417_23285 are separated by 121 nucleotidesPS417_23285 and PS417_23290 are separated by 664 nucleotides PS417_23270: PS417_23270 - 23S ribosomal RNA, at 5,037,543 to 5,040,458 _23270 PS417_23275: PS417_23275 - tRNA-Ala, at 5,040,917 to 5,040,992 _23275 PS417_23280: PS417_23280 - tRNA-Ile, at 5,041,003 to 5,041,079 _23280 PS417_23285: PS417_23285 - 16S ribosomal RNA, at 5,041,201 to 5,042,738 _23285 PS417_23290: PS417_23290 - hypothetical protein, at 5,043,403 to 5,043,732 _23290 Position (kb) 5041 5042 5043Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5040.914 kb on - strandat 5040.914 kb on - strandat 5040.914 kb on - strandat 5040.916 kb on - strandat 5040.916 kb on - strandat 5041.059 kb on - strand, within PS417_23280at 5041.072 kb on - strandat 5041.072 kb on - strandat 5041.072 kb on - strandat 5041.072 kb on - strandat 5041.072 kb on - strandat 5041.072 kb on - strandat 5041.100 kb on - strandat 5041.100 kb on - strandat 5041.104 kb on - strandat 5041.104 kb on - strandat 5041.104 kb on - strandat 5041.104 kb on - strandat 5041.179 kb on - strandat 5041.179 kb on - strandat 5041.179 kb on - strandat 5041.179 kb on - strandat 5041.179 kb on - strandat 5041.179 kb on - strandat 5041.179 kb on - strandat 5041.179 kb on - strandat 5041.179 kb on - strandat 5042.941 kb on - strandat 5042.941 kb on - strandat 5042.941 kb on - strandat 5042.969 kb on + strandat 5043.059 kb on - strandat 5043.184 kb on + strandat 5043.201 kb on + strandat 5043.201 kb on + strandat 5043.230 kb on - strandat 5043.241 kb on - strandat 5043.269 kb on + strandat 5043.480 kb on - strand, within PS417_23290at 5043.505 kb on + strand, within PS417_23290at 5043.505 kb on + strand, within PS417_23290at 5043.506 kb on - strand, within PS417_23290at 5043.506 kb on - strand, within PS417_23290at 5043.620 kb on + strand, within PS417_23290at 5043.620 kb on + strand, within PS417_23290at 5043.620 kb on + strand, within PS417_23290at 5043.712 kb on + strandat 5043.713 kb on - strandat 5043.728 kb on + strandat 5043.729 kb on - strandat 5043.729 kb on - strandat 5043.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,040,914 - +0.1
5,040,914 - -0.2
5,040,914 - -1.2
5,040,916 - -0.7
5,040,916 - -0.4
5,041,059 - PS417_23280 0.73 +0.5
5,041,072 - -0.1
5,041,072 - -0.2
5,041,072 - -0.5
5,041,072 - -0.3
5,041,072 - +0.6
5,041,072 - +0.1
5,041,100 - +2.4
5,041,100 - +0.3
5,041,104 - +1.2
5,041,104 - +0.2
5,041,104 - +0.1
5,041,104 - -0.2
5,041,179 - +0.4
5,041,179 - -0.9
5,041,179 - -2.1
5,041,179 - +1.3
5,041,179 - +1.9
5,041,179 - +0.4
5,041,179 - -0.2
5,041,179 - +0.2
5,041,179 - -1.0
5,042,941 - -0.1
5,042,941 - -0.2
5,042,941 - -0.2
5,042,969 + +0.5
5,043,059 - -1.6
5,043,184 + +0.3
5,043,201 + -1.3
5,043,201 + +1.6
5,043,230 - -0.7
5,043,241 - -0.6
5,043,269 + -0.7
5,043,480 - PS417_23290 0.23 -0.3
5,043,505 + PS417_23290 0.31 -0.6
5,043,505 + PS417_23290 0.31 -0.0
5,043,506 - PS417_23290 0.31 +0.1
5,043,506 - PS417_23290 0.31 -1.5
5,043,620 + PS417_23290 0.66 -1.5
5,043,620 + PS417_23290 0.66 +0.3
5,043,620 + PS417_23290 0.66 -2.8
5,043,712 + +0.2
5,043,713 - -1.0
5,043,728 + -0.9
5,043,729 - +1.5
5,043,729 - -0.1
5,043,731 - +1.0

Or see this region's nucleotide sequence