Strain Fitness in Pseudomonas simiae WCS417 around PS417_23015

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23000 and PS417_23005 are separated by 71 nucleotidesPS417_23005 and PS417_23015 are separated by 550 nucleotidesPS417_23015 and PS417_23020 are separated by 4 nucleotides PS417_23000: PS417_23000 - PTS N-acetyl-D-glucosamine transporter, at 4,981,506 to 4,983,212 _23000 PS417_23005: PS417_23005 - XRE family transcriptional regulator, at 4,983,284 to 4,983,571 _23005 PS417_23015: PS417_23015 - NGG1p interacting factor 3 protein, NIF3, at 4,984,122 to 4,984,433 _23015 PS417_23020: PS417_23020 - phosphoribosylformylglycinamidine synthase, at 4,984,438 to 4,988,334 _23020 Position (kb) 4984 4985Strain fitness (log2 ratio) -2 -1 0 1 2at 4983.325 kb on + strand, within PS417_23005at 4983.325 kb on + strand, within PS417_23005at 4983.326 kb on - strand, within PS417_23005at 4983.348 kb on + strand, within PS417_23005at 4983.520 kb on + strand, within PS417_23005at 4983.536 kb on + strand, within PS417_23005at 4983.629 kb on + strandat 4983.629 kb on + strandat 4983.629 kb on + strandat 4983.629 kb on + strandat 4983.630 kb on - strandat 4983.630 kb on - strandat 4983.630 kb on - strandat 4983.654 kb on + strandat 4983.754 kb on + strandat 4983.825 kb on - strandat 4983.842 kb on + strandat 4983.843 kb on - strandat 4983.907 kb on + strandat 4983.931 kb on + strandat 4983.932 kb on - strandat 4983.932 kb on - strandat 4984.110 kb on - strandat 4984.150 kb on + strandat 4984.166 kb on - strand, within PS417_23015at 4984.166 kb on - strand, within PS417_23015at 4984.342 kb on + strand, within PS417_23015at 4984.343 kb on - strand, within PS417_23015at 4984.429 kb on + strandat 4984.430 kb on - strandat 4984.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,983,325 + PS417_23005 0.14 -1.7
4,983,325 + PS417_23005 0.14 +0.3
4,983,326 - PS417_23005 0.15 -0.3
4,983,348 + PS417_23005 0.22 +0.8
4,983,520 + PS417_23005 0.82 +0.5
4,983,536 + PS417_23005 0.88 +0.1
4,983,629 + -0.3
4,983,629 + -1.2
4,983,629 + +0.3
4,983,629 + +1.3
4,983,630 - +0.2
4,983,630 - +1.3
4,983,630 - +1.7
4,983,654 + +0.4
4,983,754 + +1.8
4,983,825 - +1.1
4,983,842 + +0.7
4,983,843 - -1.0
4,983,907 + -2.4
4,983,931 + +0.4
4,983,932 - +0.6
4,983,932 - -0.3
4,984,110 - -0.9
4,984,150 + +0.9
4,984,166 - PS417_23015 0.14 +0.2
4,984,166 - PS417_23015 0.14 -0.6
4,984,342 + PS417_23015 0.71 +1.1
4,984,343 - PS417_23015 0.71 +0.2
4,984,429 + -0.2
4,984,430 - +0.2
4,984,439 + +0.4

Or see this region's nucleotide sequence