Strain Fitness in Pseudomonas simiae WCS417 around PS417_20840

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20835 and PS417_20840 are separated by 56 nucleotidesPS417_20840 and PS417_20845 are separated by 1 nucleotides PS417_20835: PS417_20835 - LysR family transcriptional regulator, at 4,524,293 to 4,525,156 _20835 PS417_20840: PS417_20840 - hypothetical protein, at 4,525,213 to 4,525,803 _20840 PS417_20845: PS417_20845 - hypothetical protein, at 4,525,805 to 4,526,851 _20845 Position (kb) 4525 4526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4524.256 kb on - strandat 4524.491 kb on + strand, within PS417_20835at 4524.502 kb on + strand, within PS417_20835at 4524.503 kb on - strand, within PS417_20835at 4524.626 kb on + strand, within PS417_20835at 4524.786 kb on + strand, within PS417_20835at 4524.936 kb on - strand, within PS417_20835at 4524.936 kb on - strand, within PS417_20835at 4525.135 kb on - strandat 4525.135 kb on - strandat 4525.192 kb on - strandat 4525.192 kb on - strandat 4525.192 kb on - strandat 4525.192 kb on - strandat 4525.192 kb on - strandat 4525.200 kb on - strandat 4525.241 kb on + strandat 4525.355 kb on + strand, within PS417_20840at 4525.355 kb on + strand, within PS417_20840at 4525.356 kb on - strand, within PS417_20840at 4525.356 kb on - strand, within PS417_20840at 4525.365 kb on + strand, within PS417_20840at 4525.365 kb on + strand, within PS417_20840at 4525.398 kb on - strand, within PS417_20840at 4525.398 kb on - strand, within PS417_20840at 4525.620 kb on - strand, within PS417_20840at 4525.664 kb on + strand, within PS417_20840at 4525.664 kb on + strand, within PS417_20840at 4525.664 kb on + strand, within PS417_20840at 4525.715 kb on + strand, within PS417_20840at 4525.716 kb on - strandat 4525.789 kb on + strandat 4525.790 kb on - strandat 4525.790 kb on - strandat 4525.794 kb on - strandat 4525.854 kb on + strandat 4525.855 kb on - strandat 4525.855 kb on - strandat 4525.855 kb on - strandat 4525.878 kb on + strandat 4525.878 kb on + strandat 4525.879 kb on - strandat 4525.879 kb on - strandat 4525.879 kb on - strandat 4525.882 kb on + strandat 4525.882 kb on + strandat 4525.882 kb on + strandat 4525.883 kb on - strandat 4525.883 kb on - strandat 4525.883 kb on - strandat 4525.883 kb on - strandat 4525.883 kb on - strandat 4525.965 kb on - strand, within PS417_20845at 4525.965 kb on - strand, within PS417_20845at 4525.965 kb on - strand, within PS417_20845at 4526.188 kb on - strand, within PS417_20845at 4526.214 kb on + strand, within PS417_20845at 4526.214 kb on + strand, within PS417_20845at 4526.214 kb on + strand, within PS417_20845at 4526.215 kb on - strand, within PS417_20845at 4526.215 kb on - strand, within PS417_20845at 4526.230 kb on - strand, within PS417_20845at 4526.230 kb on - strand, within PS417_20845at 4526.230 kb on - strand, within PS417_20845at 4526.475 kb on + strand, within PS417_20845at 4526.608 kb on + strand, within PS417_20845at 4526.643 kb on + strandat 4526.643 kb on + strand, within PS417_20845at 4526.750 kb on + strandat 4526.750 kb on + strandat 4526.754 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,524,256 - -1.3
4,524,491 + PS417_20835 0.23 +0.6
4,524,502 + PS417_20835 0.24 -0.8
4,524,503 - PS417_20835 0.24 -0.5
4,524,626 + PS417_20835 0.39 -0.3
4,524,786 + PS417_20835 0.57 -0.2
4,524,936 - PS417_20835 0.74 +0.5
4,524,936 - PS417_20835 0.74 -0.8
4,525,135 - -0.4
4,525,135 - +0.1
4,525,192 - -0.7
4,525,192 - +0.1
4,525,192 - +0.0
4,525,192 - +0.1
4,525,192 - +0.1
4,525,200 - +0.1
4,525,241 + -0.6
4,525,355 + PS417_20840 0.24 +1.6
4,525,355 + PS417_20840 0.24 -0.1
4,525,356 - PS417_20840 0.24 +1.4
4,525,356 - PS417_20840 0.24 +0.2
4,525,365 + PS417_20840 0.26 -0.5
4,525,365 + PS417_20840 0.26 +0.7
4,525,398 - PS417_20840 0.31 -1.3
4,525,398 - PS417_20840 0.31 -0.2
4,525,620 - PS417_20840 0.69 +1.7
4,525,664 + PS417_20840 0.76 +0.0
4,525,664 + PS417_20840 0.76 +0.1
4,525,664 + PS417_20840 0.76 +1.0
4,525,715 + PS417_20840 0.85 +0.3
4,525,716 - +4.2
4,525,789 + -0.5
4,525,790 - -0.3
4,525,790 - -0.0
4,525,794 - -1.1
4,525,854 + +0.5
4,525,855 - -0.7
4,525,855 - +0.0
4,525,855 - +0.6
4,525,878 + -1.6
4,525,878 + +0.2
4,525,879 - +0.3
4,525,879 - -0.5
4,525,879 - -1.1
4,525,882 + -2.3
4,525,882 + -1.1
4,525,882 + +0.3
4,525,883 - -1.0
4,525,883 - +0.2
4,525,883 - +0.9
4,525,883 - +0.5
4,525,883 - -0.0
4,525,965 - PS417_20845 0.15 -1.1
4,525,965 - PS417_20845 0.15 +1.0
4,525,965 - PS417_20845 0.15 -0.1
4,526,188 - PS417_20845 0.37 -1.0
4,526,214 + PS417_20845 0.39 -0.0
4,526,214 + PS417_20845 0.39 -3.1
4,526,214 + PS417_20845 0.39 +0.3
4,526,215 - PS417_20845 0.39 -1.7
4,526,215 - PS417_20845 0.39 -0.5
4,526,230 - PS417_20845 0.41 +0.3
4,526,230 - PS417_20845 0.41 +0.0
4,526,230 - PS417_20845 0.41 -0.3
4,526,475 + PS417_20845 0.64 +1.0
4,526,608 + PS417_20845 0.77 +0.6
4,526,643 + -1.2
4,526,643 + PS417_20845 0.80 +0.2
4,526,750 + +0.6
4,526,750 + +0.5
4,526,754 + +2.6

Or see this region's nucleotide sequence