Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02005 and PS417_02010 are separated by 263 nucleotides PS417_02010 and PS417_02015 are separated by 118 nucleotides
PS417_02005: PS417_02005 - glutamate synthase, at 447,911 to 449,329
_02005
PS417_02010: PS417_02010 - uroporphyrinogen decarboxylase, at 449,593 to 450,660
_02010
PS417_02015: PS417_02015 - membrane protein, at 450,779 to 452,053
_02015
Position (kb) 449
450
451 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 448.614 kb on - strand, within PS417_02005 at 448.614 kb on - strand, within PS417_02005 at 448.643 kb on + strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.649 kb on + strand, within PS417_02005 at 448.650 kb on - strand, within PS417_02005 at 448.650 kb on - strand, within PS417_02005 at 448.691 kb on + strand, within PS417_02005 at 448.692 kb on - strand, within PS417_02005 at 448.946 kb on + strand, within PS417_02005 at 448.946 kb on + strand, within PS417_02005 at 448.947 kb on - strand, within PS417_02005 at 449.397 kb on + strand at 449.398 kb on - strand at 450.659 kb on - strand at 450.729 kb on + strand at 450.922 kb on + strand, within PS417_02015 at 450.936 kb on + strand, within PS417_02015 at 450.937 kb on - strand, within PS417_02015 at 450.939 kb on + strand, within PS417_02015 at 450.939 kb on + strand, within PS417_02015 at 450.951 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.183 kb on - strand, within PS417_02015 at 451.187 kb on - strand, within PS417_02015 at 451.197 kb on + strand, within PS417_02015 at 451.198 kb on - strand, within PS417_02015 at 451.198 kb on - strand, within PS417_02015 at 451.240 kb on - strand, within PS417_02015 at 451.269 kb on + strand, within PS417_02015 at 451.269 kb on + strand, within PS417_02015 at 451.270 kb on - strand, within PS417_02015 at 451.270 kb on - strand, within PS417_02015 at 451.554 kb on + strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.606 kb on - strand, within PS417_02015 at 451.606 kb on - strand, within PS417_02015
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 448,614 - PS417_02005 0.50 -5.7 448,614 - PS417_02005 0.50 -3.4 448,643 + PS417_02005 0.52 -2.9 448,644 - PS417_02005 0.52 -4.2 448,644 - PS417_02005 0.52 -4.3 448,644 - PS417_02005 0.52 -1.1 448,644 - PS417_02005 0.52 -3.1 448,649 + PS417_02005 0.52 -3.8 448,650 - PS417_02005 0.52 -3.3 448,650 - PS417_02005 0.52 -3.2 448,691 + PS417_02005 0.55 -4.0 448,692 - PS417_02005 0.55 -2.5 448,946 + PS417_02005 0.73 -5.5 448,946 + PS417_02005 0.73 -2.3 448,947 - PS417_02005 0.73 -2.1 449,397 + +0.4 449,398 - +1.4 450,659 - +0.4 450,729 + -0.4 450,922 + PS417_02015 0.11 +0.3 450,936 + PS417_02015 0.12 -1.9 450,937 - PS417_02015 0.12 -1.6 450,939 + PS417_02015 0.13 -0.1 450,939 + PS417_02015 0.13 +0.3 450,951 + PS417_02015 0.13 +0.0 451,182 + PS417_02015 0.32 -0.4 451,182 + PS417_02015 0.32 -0.7 451,182 + PS417_02015 0.32 +2.2 451,182 + PS417_02015 0.32 -1.0 451,183 - PS417_02015 0.32 +0.5 451,187 - PS417_02015 0.32 -0.8 451,197 + PS417_02015 0.33 +0.0 451,198 - PS417_02015 0.33 -0.3 451,198 - PS417_02015 0.33 -0.7 451,240 - PS417_02015 0.36 -0.6 451,269 + PS417_02015 0.38 +1.9 451,269 + PS417_02015 0.38 +0.2 451,270 - PS417_02015 0.39 -0.2 451,270 - PS417_02015 0.39 +0.5 451,554 + PS417_02015 0.61 +0.5 451,555 - PS417_02015 0.61 +1.7 451,555 - PS417_02015 0.61 +0.8 451,555 - PS417_02015 0.61 -2.1 451,555 - PS417_02015 0.61 +0.3 451,606 - PS417_02015 0.65 -0.4 451,606 - PS417_02015 0.65 -1.1
Or see this region's nucleotide sequence