Strain Fitness in Pseudomonas simiae WCS417 around PS417_01660

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_01655 and PS417_01660 are separated by 334 nucleotidesPS417_01660 and PS417_01665 are separated by 139 nucleotides PS417_01655: PS417_01655 - glutamine synthetase, at 362,165 to 363,571 _01655 PS417_01660: PS417_01660 - tRNA s(4)U8 sulfurtransferase, at 363,906 to 365,360 _01660 PS417_01665: PS417_01665 - GTP-binding protein TypA, at 365,500 to 367,320 _01665 Position (kb) 363 364 365 366Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 363.644 kb on - strandat 363.727 kb on + strandat 363.727 kb on + strandat 363.729 kb on + strandat 363.740 kb on + strandat 363.774 kb on + strandat 363.774 kb on + strandat 363.799 kb on + strandat 363.826 kb on + strandat 363.826 kb on + strandat 363.826 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 365.442 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
363,644 - -0.9
363,727 + -1.0
363,727 + +2.0
363,729 + -4.3
363,740 + -3.4
363,774 + +1.0
363,774 + -2.8
363,799 + -0.6
363,826 + -0.7
363,826 + +0.5
363,826 + -1.2
363,829 + +2.0
363,829 + -1.7
363,829 + -0.6
363,829 + -1.3
363,829 + -0.1
363,829 + +0.1
365,442 - -0.6

Or see this region's nucleotide sequence