Strain Fitness in Pseudomonas simiae WCS417 around PS417_15120

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15115 and PS417_15120 overlap by 4 nucleotidesPS417_15120 and PS417_15125 overlap by 4 nucleotidesPS417_15125 and PS417_15135 are separated by 281 nucleotides PS417_15115: PS417_15115 - exonuclease SbcD, at 3,306,232 to 3,307,473 _15115 PS417_15120: PS417_15120 - chromosome segregation protein SMC, at 3,307,470 to 3,311,108 _15120 PS417_15125: PS417_15125 - glutathione S-transferase, at 3,311,105 to 3,311,698 _15125 PS417_15135: PS417_15135 - hypothetical protein, at 3,311,980 to 3,312,159 _15135 Position (kb) 3307 3308 3309 3310 3311 3312Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3306.704 kb on - strand, within PS417_15115at 3306.704 kb on - strand, within PS417_15115at 3307.289 kb on - strand, within PS417_15115at 3307.391 kb on - strandat 3307.905 kb on + strand, within PS417_15120at 3308.055 kb on + strandat 3308.111 kb on + strand, within PS417_15120at 3308.119 kb on + strand, within PS417_15120at 3308.120 kb on - strand, within PS417_15120at 3308.483 kb on + strand, within PS417_15120at 3308.830 kb on + strand, within PS417_15120at 3308.986 kb on + strand, within PS417_15120at 3309.309 kb on + strand, within PS417_15120at 3309.456 kb on + strand, within PS417_15120at 3309.457 kb on - strand, within PS417_15120at 3309.457 kb on - strand, within PS417_15120at 3309.528 kb on + strand, within PS417_15120at 3311.026 kb on + strandat 3311.123 kb on + strandat 3311.123 kb on + strandat 3311.124 kb on - strandat 3311.349 kb on + strand, within PS417_15125at 3311.409 kb on - strand, within PS417_15125at 3311.526 kb on - strand, within PS417_15125at 3311.696 kb on + strandat 3311.784 kb on - strandat 3312.047 kb on + strand, within PS417_15135at 3312.048 kb on - strand, within PS417_15135

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,306,704 - PS417_15115 0.38 +0.4
3,306,704 - PS417_15115 0.38 -0.5
3,307,289 - PS417_15115 0.85 -1.3
3,307,391 - -0.0
3,307,905 + PS417_15120 0.12 -0.5
3,308,055 + -0.5
3,308,111 + PS417_15120 0.18 -0.4
3,308,119 + PS417_15120 0.18 -1.6
3,308,120 - PS417_15120 0.18 -1.1
3,308,483 + PS417_15120 0.28 -2.5
3,308,830 + PS417_15120 0.37 -1.7
3,308,986 + PS417_15120 0.42 +0.2
3,309,309 + PS417_15120 0.51 -0.8
3,309,456 + PS417_15120 0.55 -0.1
3,309,457 - PS417_15120 0.55 -0.3
3,309,457 - PS417_15120 0.55 -0.1
3,309,528 + PS417_15120 0.57 -0.1
3,311,026 + +0.5
3,311,123 + +0.5
3,311,123 + -0.7
3,311,124 - +0.6
3,311,349 + PS417_15125 0.41 -1.2
3,311,409 - PS417_15125 0.51 -0.1
3,311,526 - PS417_15125 0.71 -0.6
3,311,696 + +0.1
3,311,784 - -1.8
3,312,047 + PS417_15135 0.37 -1.0
3,312,048 - PS417_15135 0.38 -4.4

Or see this region's nucleotide sequence