Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14675 and PS417_14680 are separated by 123 nucleotides PS417_14680 and PS417_14690 are separated by 708 nucleotides
PS417_14675: PS417_14675 - aldehyde dehydrogenase, at 3,204,812 to 3,206,242
_14675
PS417_14680: PS417_14680 - LysR family transcriptional regulator, at 3,206,366 to 3,207,268
_14680
PS417_14690: PS417_14690 - chemotaxis protein, at 3,207,977 to 3,209,632
_14690
Position (kb)
3206
3207
3208 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3205.662 kb on - strand, within PS417_14675 at 3205.662 kb on - strand, within PS417_14675 at 3205.789 kb on + strand, within PS417_14675 at 3205.805 kb on - strand, within PS417_14675 at 3205.895 kb on + strand, within PS417_14675 at 3205.895 kb on + strand, within PS417_14675 at 3205.968 kb on + strand at 3206.220 kb on + strand at 3206.220 kb on + strand at 3206.221 kb on - strand at 3206.221 kb on - strand at 3206.221 kb on - strand at 3206.325 kb on - strand at 3206.564 kb on + strand, within PS417_14680 at 3206.656 kb on + strand, within PS417_14680 at 3206.681 kb on + strand, within PS417_14680 at 3206.682 kb on - strand at 3206.850 kb on - strand, within PS417_14680 at 3206.850 kb on - strand, within PS417_14680 at 3207.108 kb on + strand, within PS417_14680 at 3207.185 kb on + strand at 3207.185 kb on + strand at 3207.185 kb on + strand at 3207.186 kb on - strand at 3207.574 kb on + strand at 3207.575 kb on - strand at 3207.610 kb on + strand at 3207.653 kb on + strand at 3207.697 kb on - strand at 3207.802 kb on - strand at 3207.854 kb on - strand at 3207.924 kb on + strand at 3207.925 kb on - strand at 3207.925 kb on - strand at 3207.925 kb on - strand at 3207.925 kb on - strand at 3207.928 kb on + strand at 3207.928 kb on + strand at 3207.929 kb on - strand at 3207.929 kb on - strand at 3207.971 kb on + strand at 3207.972 kb on - strand at 3207.972 kb on - strand at 3208.020 kb on - strand at 3208.077 kb on - strand at 3208.193 kb on - strand, within PS417_14690 at 3208.203 kb on + strand, within PS417_14690
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,205,662 - PS417_14675 0.59 -2.3 3,205,662 - PS417_14675 0.59 +0.0 3,205,789 + PS417_14675 0.68 +0.3 3,205,805 - PS417_14675 0.69 +1.1 3,205,895 + PS417_14675 0.76 +0.1 3,205,895 + PS417_14675 0.76 +0.2 3,205,968 + -0.9 3,206,220 + +0.9 3,206,220 + -0.5 3,206,221 - -0.7 3,206,221 - +1.4 3,206,221 - +0.4 3,206,325 - +0.5 3,206,564 + PS417_14680 0.22 +0.5 3,206,656 + PS417_14680 0.32 +0.5 3,206,681 + PS417_14680 0.35 +0.8 3,206,682 - -1.3 3,206,850 - PS417_14680 0.54 -1.1 3,206,850 - PS417_14680 0.54 +1.4 3,207,108 + PS417_14680 0.82 -0.0 3,207,185 + -2.0 3,207,185 + +0.1 3,207,185 + +0.2 3,207,186 - +0.8 3,207,574 + -0.8 3,207,575 - -0.2 3,207,610 + -2.0 3,207,653 + -2.3 3,207,697 - -0.7 3,207,802 - -0.5 3,207,854 - -1.9 3,207,924 + -3.5 3,207,925 - +1.0 3,207,925 - -0.8 3,207,925 - -1.8 3,207,925 - -0.9 3,207,928 + -2.4 3,207,928 + -0.5 3,207,929 - -2.1 3,207,929 - -1.0 3,207,971 + -1.2 3,207,972 - +0.2 3,207,972 - +0.6 3,208,020 - -0.3 3,208,077 - -0.4 3,208,193 - PS417_14690 0.13 +0.5 3,208,203 + PS417_14690 0.14 +0.1
Or see this region's nucleotide sequence