Strain Fitness in Pseudomonas simiae WCS417 around PS417_14680

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14675 and PS417_14680 are separated by 123 nucleotidesPS417_14680 and PS417_14690 are separated by 708 nucleotides PS417_14675: PS417_14675 - aldehyde dehydrogenase, at 3,204,812 to 3,206,242 _14675 PS417_14680: PS417_14680 - LysR family transcriptional regulator, at 3,206,366 to 3,207,268 _14680 PS417_14690: PS417_14690 - chemotaxis protein, at 3,207,977 to 3,209,632 _14690 Position (kb) 3206 3207 3208Strain fitness (log2 ratio) -3 -2 -1 0 1at 3205.662 kb on - strand, within PS417_14675at 3205.662 kb on - strand, within PS417_14675at 3205.789 kb on + strand, within PS417_14675at 3205.805 kb on - strand, within PS417_14675at 3205.895 kb on + strand, within PS417_14675at 3205.895 kb on + strand, within PS417_14675at 3205.968 kb on + strandat 3206.220 kb on + strandat 3206.220 kb on + strandat 3206.221 kb on - strandat 3206.221 kb on - strandat 3206.221 kb on - strandat 3206.325 kb on - strandat 3206.564 kb on + strand, within PS417_14680at 3206.656 kb on + strand, within PS417_14680at 3206.681 kb on + strand, within PS417_14680at 3206.682 kb on - strandat 3206.850 kb on - strand, within PS417_14680at 3206.850 kb on - strand, within PS417_14680at 3207.108 kb on + strand, within PS417_14680at 3207.185 kb on + strandat 3207.185 kb on + strandat 3207.185 kb on + strandat 3207.186 kb on - strandat 3207.574 kb on + strandat 3207.575 kb on - strandat 3207.610 kb on + strandat 3207.653 kb on + strandat 3207.697 kb on - strandat 3207.802 kb on - strandat 3207.854 kb on - strandat 3207.924 kb on + strandat 3207.925 kb on - strandat 3207.925 kb on - strandat 3207.925 kb on - strandat 3207.925 kb on - strandat 3207.928 kb on + strandat 3207.928 kb on + strandat 3207.929 kb on - strandat 3207.929 kb on - strandat 3207.971 kb on + strandat 3207.972 kb on - strandat 3207.972 kb on - strandat 3208.020 kb on - strandat 3208.077 kb on - strandat 3208.193 kb on - strand, within PS417_14690at 3208.203 kb on + strand, within PS417_14690

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,205,662 - PS417_14675 0.59 -2.3
3,205,662 - PS417_14675 0.59 +0.0
3,205,789 + PS417_14675 0.68 +0.3
3,205,805 - PS417_14675 0.69 +1.1
3,205,895 + PS417_14675 0.76 +0.1
3,205,895 + PS417_14675 0.76 +0.2
3,205,968 + -0.9
3,206,220 + +0.9
3,206,220 + -0.5
3,206,221 - -0.7
3,206,221 - +1.4
3,206,221 - +0.4
3,206,325 - +0.5
3,206,564 + PS417_14680 0.22 +0.5
3,206,656 + PS417_14680 0.32 +0.5
3,206,681 + PS417_14680 0.35 +0.8
3,206,682 - -1.3
3,206,850 - PS417_14680 0.54 -1.1
3,206,850 - PS417_14680 0.54 +1.4
3,207,108 + PS417_14680 0.82 -0.0
3,207,185 + -2.0
3,207,185 + +0.1
3,207,185 + +0.2
3,207,186 - +0.8
3,207,574 + -0.8
3,207,575 - -0.2
3,207,610 + -2.0
3,207,653 + -2.3
3,207,697 - -0.7
3,207,802 - -0.5
3,207,854 - -1.9
3,207,924 + -3.5
3,207,925 - +1.0
3,207,925 - -0.8
3,207,925 - -1.8
3,207,925 - -0.9
3,207,928 + -2.4
3,207,928 + -0.5
3,207,929 - -2.1
3,207,929 - -1.0
3,207,971 + -1.2
3,207,972 - +0.2
3,207,972 - +0.6
3,208,020 - -0.3
3,208,077 - -0.4
3,208,193 - PS417_14690 0.13 +0.5
3,208,203 + PS417_14690 0.14 +0.1

Or see this region's nucleotide sequence