Strain Fitness in Pseudomonas simiae WCS417 around PS417_11650

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11645 and PS417_11650 are separated by 234 nucleotidesPS417_11650 and PS417_11655 are separated by 2 nucleotidesPS417_11655 and PS417_11660 are separated by 15 nucleotides PS417_11645: PS417_11645 - chemotaxis protein, at 2,505,447 to 2,507,087 _11645 PS417_11650: PS417_11650 - formamidase, at 2,507,322 to 2,508,551 _11650 PS417_11655: PS417_11655 - FmdB family transcriptional regulator, at 2,508,554 to 2,508,901 _11655 PS417_11660: PS417_11660 - acylamide amidohydrolase, at 2,508,917 to 2,509,960 _11660 Position (kb) 2507 2508 2509Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2506.727 kb on + strand, within PS417_11645at 2507.075 kb on + strandat 2507.075 kb on + strandat 2507.075 kb on + strandat 2507.124 kb on + strandat 2507.149 kb on + strandat 2507.180 kb on - strandat 2507.183 kb on + strandat 2507.184 kb on - strandat 2507.188 kb on - strandat 2507.188 kb on - strandat 2507.238 kb on + strandat 2507.238 kb on + strandat 2507.239 kb on - strandat 2507.239 kb on - strandat 2507.253 kb on - strandat 2507.253 kb on - strandat 2507.532 kb on + strand, within PS417_11650at 2507.533 kb on - strand, within PS417_11650at 2507.533 kb on - strand, within PS417_11650at 2507.741 kb on + strand, within PS417_11650at 2508.040 kb on - strand, within PS417_11650at 2508.040 kb on - strand, within PS417_11650at 2508.040 kb on - strand, within PS417_11650at 2508.177 kb on + strand, within PS417_11650at 2508.234 kb on + strand, within PS417_11650at 2508.235 kb on - strand, within PS417_11650at 2508.333 kb on + strand, within PS417_11650at 2508.564 kb on - strandat 2508.569 kb on + strandat 2508.569 kb on + strandat 2508.900 kb on - strandat 2508.915 kb on + strandat 2508.915 kb on + strandat 2508.961 kb on - strandat 2508.974 kb on + strandat 2508.975 kb on - strandat 2509.094 kb on + strand, within PS417_11660at 2509.263 kb on - strand, within PS417_11660at 2509.263 kb on - strand, within PS417_11660at 2509.367 kb on + strand, within PS417_11660at 2509.368 kb on - strand, within PS417_11660at 2509.368 kb on - strand, within PS417_11660at 2509.490 kb on + strand, within PS417_11660at 2509.491 kb on - strand, within PS417_11660at 2509.493 kb on - strandat 2509.493 kb on - strand, within PS417_11660at 2509.497 kb on - strand, within PS417_11660at 2509.549 kb on + strand, within PS417_11660

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,506,727 + PS417_11645 0.78 +0.9
2,507,075 + -0.1
2,507,075 + +0.3
2,507,075 + -0.6
2,507,124 + +3.3
2,507,149 + +0.5
2,507,180 - -0.5
2,507,183 + -0.4
2,507,184 - -0.7
2,507,188 - -0.7
2,507,188 - +1.3
2,507,238 + +0.3
2,507,238 + +0.7
2,507,239 - +1.2
2,507,239 - -0.3
2,507,253 - +3.1
2,507,253 - +0.4
2,507,532 + PS417_11650 0.17 -0.7
2,507,533 - PS417_11650 0.17 -1.8
2,507,533 - PS417_11650 0.17 -2.5
2,507,741 + PS417_11650 0.34 +0.3
2,508,040 - PS417_11650 0.58 -0.8
2,508,040 - PS417_11650 0.58 -1.3
2,508,040 - PS417_11650 0.58 -0.3
2,508,177 + PS417_11650 0.70 -0.2
2,508,234 + PS417_11650 0.74 +0.1
2,508,235 - PS417_11650 0.74 -0.2
2,508,333 + PS417_11650 0.82 +0.1
2,508,564 - -1.2
2,508,569 + +1.5
2,508,569 + -0.4
2,508,900 - -0.6
2,508,915 + -0.9
2,508,915 + +0.1
2,508,961 - +0.2
2,508,974 + -1.7
2,508,975 - -0.6
2,509,094 + PS417_11660 0.17 +1.1
2,509,263 - PS417_11660 0.33 -1.1
2,509,263 - PS417_11660 0.33 +0.0
2,509,367 + PS417_11660 0.43 +0.4
2,509,368 - PS417_11660 0.43 -0.4
2,509,368 - PS417_11660 0.43 -0.2
2,509,490 + PS417_11660 0.55 +0.1
2,509,491 - PS417_11660 0.55 +0.8
2,509,493 - +0.1
2,509,493 - PS417_11660 0.55 -0.7
2,509,497 - PS417_11660 0.56 +0.7
2,509,549 + PS417_11660 0.61 -0.3

Or see this region's nucleotide sequence