Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11645 and PS417_11650 are separated by 234 nucleotides PS417_11650 and PS417_11655 are separated by 2 nucleotides PS417_11655 and PS417_11660 are separated by 15 nucleotides
PS417_11645: PS417_11645 - chemotaxis protein, at 2,505,447 to 2,507,087
_11645
PS417_11650: PS417_11650 - formamidase, at 2,507,322 to 2,508,551
_11650
PS417_11655: PS417_11655 - FmdB family transcriptional regulator, at 2,508,554 to 2,508,901
_11655
PS417_11660: PS417_11660 - acylamide amidohydrolase, at 2,508,917 to 2,509,960
_11660
Position (kb)
2507
2508
2509 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2506.727 kb on + strand, within PS417_11645 at 2507.075 kb on + strand at 2507.075 kb on + strand at 2507.075 kb on + strand at 2507.124 kb on + strand at 2507.149 kb on + strand at 2507.180 kb on - strand at 2507.183 kb on + strand at 2507.184 kb on - strand at 2507.188 kb on - strand at 2507.188 kb on - strand at 2507.238 kb on + strand at 2507.238 kb on + strand at 2507.239 kb on - strand at 2507.239 kb on - strand at 2507.253 kb on - strand at 2507.253 kb on - strand at 2507.532 kb on + strand, within PS417_11650 at 2507.533 kb on - strand, within PS417_11650 at 2507.533 kb on - strand, within PS417_11650 at 2507.741 kb on + strand, within PS417_11650 at 2508.040 kb on - strand, within PS417_11650 at 2508.040 kb on - strand, within PS417_11650 at 2508.040 kb on - strand, within PS417_11650 at 2508.177 kb on + strand, within PS417_11650 at 2508.234 kb on + strand, within PS417_11650 at 2508.235 kb on - strand, within PS417_11650 at 2508.333 kb on + strand, within PS417_11650 at 2508.564 kb on - strand at 2508.569 kb on + strand at 2508.569 kb on + strand at 2508.900 kb on - strand at 2508.915 kb on + strand at 2508.915 kb on + strand at 2508.961 kb on - strand at 2508.974 kb on + strand at 2508.975 kb on - strand at 2509.094 kb on + strand, within PS417_11660 at 2509.263 kb on - strand, within PS417_11660 at 2509.263 kb on - strand, within PS417_11660 at 2509.367 kb on + strand, within PS417_11660 at 2509.368 kb on - strand, within PS417_11660 at 2509.368 kb on - strand, within PS417_11660 at 2509.490 kb on + strand, within PS417_11660 at 2509.491 kb on - strand, within PS417_11660 at 2509.493 kb on - strand at 2509.493 kb on - strand, within PS417_11660 at 2509.497 kb on - strand, within PS417_11660 at 2509.549 kb on + strand, within PS417_11660
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,506,727 + PS417_11645 0.78 +0.9 2,507,075 + -0.1 2,507,075 + +0.3 2,507,075 + -0.6 2,507,124 + +3.3 2,507,149 + +0.5 2,507,180 - -0.5 2,507,183 + -0.4 2,507,184 - -0.7 2,507,188 - -0.7 2,507,188 - +1.3 2,507,238 + +0.3 2,507,238 + +0.7 2,507,239 - +1.2 2,507,239 - -0.3 2,507,253 - +3.1 2,507,253 - +0.4 2,507,532 + PS417_11650 0.17 -0.7 2,507,533 - PS417_11650 0.17 -1.8 2,507,533 - PS417_11650 0.17 -2.5 2,507,741 + PS417_11650 0.34 +0.3 2,508,040 - PS417_11650 0.58 -0.8 2,508,040 - PS417_11650 0.58 -1.3 2,508,040 - PS417_11650 0.58 -0.3 2,508,177 + PS417_11650 0.70 -0.2 2,508,234 + PS417_11650 0.74 +0.1 2,508,235 - PS417_11650 0.74 -0.2 2,508,333 + PS417_11650 0.82 +0.1 2,508,564 - -1.2 2,508,569 + +1.5 2,508,569 + -0.4 2,508,900 - -0.6 2,508,915 + -0.9 2,508,915 + +0.1 2,508,961 - +0.2 2,508,974 + -1.7 2,508,975 - -0.6 2,509,094 + PS417_11660 0.17 +1.1 2,509,263 - PS417_11660 0.33 -1.1 2,509,263 - PS417_11660 0.33 +0.0 2,509,367 + PS417_11660 0.43 +0.4 2,509,368 - PS417_11660 0.43 -0.4 2,509,368 - PS417_11660 0.43 -0.2 2,509,490 + PS417_11660 0.55 +0.1 2,509,491 - PS417_11660 0.55 +0.8 2,509,493 - +0.1 2,509,493 - PS417_11660 0.55 -0.7 2,509,497 - PS417_11660 0.56 +0.7 2,509,549 + PS417_11660 0.61 -0.3
Or see this region's nucleotide sequence