Strain Fitness in Pseudomonas simiae WCS417 around PS417_11140

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11130 and PS417_11135 are separated by 13 nucleotidesPS417_11135 and PS417_11140 overlap by 4 nucleotidesPS417_11140 and PS417_11145 are separated by 2 nucleotides PS417_11130: PS417_11130 - peptide ABC transporter substrate-binding protein, at 2,385,390 to 2,386,946 _11130 PS417_11135: PS417_11135 - peptide ABC transporter, at 2,386,960 to 2,387,901 _11135 PS417_11140: PS417_11140 - peptide ABC transporter permease, at 2,387,898 to 2,388,752 _11140 PS417_11145: PS417_11145 - peptide ABC transporter ATP-binding protein, at 2,388,755 to 2,390,383 _11145 Position (kb) 2387 2388 2389Strain fitness (log2 ratio) -1 0 1 2at 2387.459 kb on - strand, within PS417_11135at 2387.836 kb on + strandat 2387.836 kb on + strandat 2387.837 kb on - strandat 2387.837 kb on - strandat 2387.898 kb on - strandat 2388.363 kb on + strand, within PS417_11140at 2388.424 kb on - strandat 2388.463 kb on - strand, within PS417_11140at 2388.463 kb on - strand, within PS417_11140at 2388.630 kb on + strand, within PS417_11140at 2388.631 kb on - strand, within PS417_11140

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,387,459 - PS417_11135 0.53 -0.0
2,387,836 + +0.6
2,387,836 + -0.2
2,387,837 - -0.6
2,387,837 - +0.3
2,387,898 - +1.5
2,388,363 + PS417_11140 0.54 -0.0
2,388,424 - +1.9
2,388,463 - PS417_11140 0.66 -0.1
2,388,463 - PS417_11140 0.66 +0.8
2,388,630 + PS417_11140 0.86 +0.5
2,388,631 - PS417_11140 0.86 +1.1

Or see this region's nucleotide sequence