Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11130 and PS417_11135 are separated by 13 nucleotides PS417_11135 and PS417_11140 overlap by 4 nucleotides PS417_11140 and PS417_11145 are separated by 2 nucleotides
PS417_11130: PS417_11130 - peptide ABC transporter substrate-binding protein, at 2,385,390 to 2,386,946
_11130
PS417_11135: PS417_11135 - peptide ABC transporter, at 2,386,960 to 2,387,901
_11135
PS417_11140: PS417_11140 - peptide ABC transporter permease, at 2,387,898 to 2,388,752
_11140
PS417_11145: PS417_11145 - peptide ABC transporter ATP-binding protein, at 2,388,755 to 2,390,383
_11145
Position (kb)
2387
2388
2389 Strain fitness (log2 ratio)
-1
0
1
2 at 2387.459 kb on - strand, within PS417_11135 at 2387.836 kb on + strand at 2387.836 kb on + strand at 2387.837 kb on - strand at 2387.837 kb on - strand at 2387.898 kb on - strand at 2388.363 kb on + strand, within PS417_11140 at 2388.424 kb on - strand at 2388.463 kb on - strand, within PS417_11140 at 2388.463 kb on - strand, within PS417_11140 at 2388.630 kb on + strand, within PS417_11140 at 2388.631 kb on - strand, within PS417_11140
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,387,459 - PS417_11135 0.53 -0.0 2,387,836 + +0.6 2,387,836 + -0.2 2,387,837 - -0.6 2,387,837 - +0.3 2,387,898 - +1.5 2,388,363 + PS417_11140 0.54 -0.0 2,388,424 - +1.9 2,388,463 - PS417_11140 0.66 -0.1 2,388,463 - PS417_11140 0.66 +0.8 2,388,630 + PS417_11140 0.86 +0.5 2,388,631 - PS417_11140 0.86 +1.1
Or see this region's nucleotide sequence