Strain Fitness in Pseudomonas simiae WCS417 around PS417_01060

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01055 and PS417_01060 are separated by 423 nucleotidesPS417_01060 and PS417_01065 overlap by 11 nucleotides PS417_01055: PS417_01055 - methyltransferase, at 231,510 to 232,136 _01055 PS417_01060: PS417_01060 - ABC transporter permease, at 232,560 to 233,204 _01060 PS417_01065: PS417_01065 - ABC transporter, at 233,194 to 234,309 _01065 Position (kb) 232 233 234Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 231.574 kb on + strand, within PS417_01055at 231.577 kb on + strand, within PS417_01055at 231.577 kb on + strand, within PS417_01055at 231.577 kb on + strand, within PS417_01055at 231.578 kb on - strand, within PS417_01055at 231.578 kb on - strand, within PS417_01055at 231.992 kb on + strand, within PS417_01055at 232.082 kb on - strandat 232.166 kb on + strandat 232.166 kb on + strandat 232.166 kb on + strandat 232.166 kb on + strandat 232.167 kb on - strandat 232.167 kb on - strandat 232.167 kb on - strandat 232.167 kb on - strandat 232.167 kb on - strandat 232.168 kb on + strandat 232.168 kb on + strandat 232.168 kb on + strandat 232.169 kb on - strandat 232.244 kb on - strandat 232.284 kb on + strandat 232.284 kb on + strandat 232.285 kb on - strandat 232.285 kb on - strandat 232.285 kb on - strandat 232.302 kb on + strandat 232.313 kb on + strandat 232.313 kb on + strandat 232.314 kb on - strandat 232.314 kb on - strandat 232.315 kb on + strandat 232.315 kb on + strandat 232.316 kb on - strandat 232.316 kb on - strandat 232.321 kb on + strandat 232.321 kb on + strandat 232.349 kb on + strandat 232.349 kb on + strandat 232.350 kb on - strandat 232.350 kb on - strandat 232.557 kb on + strandat 232.558 kb on - strandat 232.558 kb on - strandat 232.955 kb on - strand, within PS417_01060at 233.075 kb on - strand, within PS417_01060at 233.075 kb on - strand, within PS417_01060at 233.075 kb on - strand, within PS417_01060at 233.075 kb on - strand, within PS417_01060at 233.078 kb on + strand, within PS417_01060at 233.078 kb on + strand, within PS417_01060at 233.078 kb on + strand, within PS417_01060at 233.079 kb on - strand, within PS417_01060at 233.079 kb on - strand, within PS417_01060at 233.320 kb on - strand, within PS417_01065

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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231,574 + PS417_01055 0.10 -0.0
231,577 + PS417_01055 0.11 -0.2
231,577 + PS417_01055 0.11 -0.8
231,577 + PS417_01055 0.11 +0.1
231,578 - PS417_01055 0.11 +1.0
231,578 - PS417_01055 0.11 +0.6
231,992 + PS417_01055 0.77 -2.3
232,082 - +0.1
232,166 + -0.5
232,166 + -0.1
232,166 + +0.1
232,166 + -1.5
232,167 - -0.1
232,167 - -2.0
232,167 - -1.3
232,167 - +0.6
232,167 - -0.4
232,168 + +2.0
232,168 + -1.7
232,168 + -0.6
232,169 - +1.0
232,244 - -3.6
232,284 + +0.2
232,284 + +0.1
232,285 - -4.0
232,285 - -0.2
232,285 - +0.2
232,302 + +0.3
232,313 + +2.0
232,313 + -0.6
232,314 - +0.3
232,314 - -0.2
232,315 + -0.7
232,315 + -2.1
232,316 - +0.5
232,316 - +0.6
232,321 + +0.1
232,321 + +0.1
232,349 + +0.5
232,349 + -0.7
232,350 - -0.6
232,350 - -0.3
232,557 + +1.4
232,558 - -0.3
232,558 - +1.7
232,955 - PS417_01060 0.61 +3.4
233,075 - PS417_01060 0.80 +1.2
233,075 - PS417_01060 0.80 +0.1
233,075 - PS417_01060 0.80 +0.1
233,075 - PS417_01060 0.80 +0.7
233,078 + PS417_01060 0.80 -2.3
233,078 + PS417_01060 0.80 +0.5
233,078 + PS417_01060 0.80 -0.1
233,079 - PS417_01060 0.80 -0.0
233,079 - PS417_01060 0.80 +0.5
233,320 - PS417_01065 0.11 +1.2

Or see this region's nucleotide sequence