Strain Fitness in Pseudomonas simiae WCS417 around PS417_10225

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10210 and PS417_10215 overlap by 1 nucleotidesPS417_10215 and PS417_10220 are separated by 5 nucleotidesPS417_10220 and PS417_10225 are separated by 56 nucleotidesPS417_10225 and PS417_10230 are separated by 198 nucleotides PS417_10210: PS417_10210 - hypothetical protein, at 2,185,125 to 2,185,640 _10210 PS417_10215: PS417_10215 - hypothetical protein, at 2,185,640 to 2,185,930 _10215 PS417_10220: PS417_10220 - hypothetical protein, at 2,185,936 to 2,186,181 _10220 PS417_10225: PS417_10225 - chitinase, at 2,186,238 to 2,186,771 _10225 PS417_10230: PS417_10230 - hypothetical protein, at 2,186,970 to 2,187,203 _10230 Position (kb) 2186 2187Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2185.341 kb on + strand, within PS417_10210at 2185.413 kb on - strand, within PS417_10210at 2185.501 kb on + strand, within PS417_10210at 2185.502 kb on - strand, within PS417_10210at 2185.502 kb on - strand, within PS417_10210at 2185.575 kb on + strand, within PS417_10210at 2185.576 kb on - strand, within PS417_10210at 2185.596 kb on + strandat 2185.596 kb on + strandat 2185.596 kb on + strandat 2185.614 kb on + strandat 2185.615 kb on - strandat 2185.615 kb on - strandat 2185.615 kb on - strandat 2185.615 kb on - strandat 2185.615 kb on - strandat 2185.649 kb on - strandat 2185.649 kb on - strandat 2185.792 kb on - strand, within PS417_10215at 2185.873 kb on + strandat 2185.926 kb on + strandat 2185.927 kb on - strandat 2186.068 kb on + strand, within PS417_10220at 2186.068 kb on + strand, within PS417_10220at 2186.068 kb on + strand, within PS417_10220at 2186.130 kb on + strand, within PS417_10220at 2186.131 kb on - strandat 2186.401 kb on + strand, within PS417_10225at 2186.401 kb on + strand, within PS417_10225at 2186.401 kb on + strand, within PS417_10225at 2186.402 kb on - strand, within PS417_10225at 2186.448 kb on + strand, within PS417_10225at 2186.499 kb on + strand, within PS417_10225at 2186.499 kb on + strand, within PS417_10225at 2186.542 kb on - strand, within PS417_10225at 2186.852 kb on + strandat 2187.228 kb on - strandat 2187.242 kb on + strandat 2187.243 kb on - strandat 2187.243 kb on - strandat 2187.243 kb on - strandat 2187.243 kb on - strandat 2187.243 kb on - strandat 2187.297 kb on + strandat 2187.395 kb on + strandat 2187.464 kb on + strandat 2187.465 kb on - strandat 2187.465 kb on - strandat 2187.491 kb on + strandat 2187.497 kb on + strandat 2187.497 kb on + strandat 2187.500 kb on + strandat 2187.501 kb on - strandat 2187.537 kb on + strandat 2187.552 kb on + strandat 2187.553 kb on - strandat 2187.594 kb on + strandat 2187.663 kb on + strandat 2187.664 kb on - strandat 2187.702 kb on + strandat 2187.702 kb on + strandat 2187.706 kb on + strandat 2187.707 kb on - strandat 2187.707 kb on - strandat 2187.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,185,341 + PS417_10210 0.42 +0.1
2,185,413 - PS417_10210 0.56 +2.2
2,185,501 + PS417_10210 0.73 +0.7
2,185,502 - PS417_10210 0.73 -0.4
2,185,502 - PS417_10210 0.73 -0.1
2,185,575 + PS417_10210 0.87 +0.9
2,185,576 - PS417_10210 0.87 -0.4
2,185,596 + +1.3
2,185,596 + -2.1
2,185,596 + +0.5
2,185,614 + -1.4
2,185,615 - -0.4
2,185,615 - +0.3
2,185,615 - -0.4
2,185,615 - +1.2
2,185,615 - -1.9
2,185,649 - -0.6
2,185,649 - +0.7
2,185,792 - PS417_10215 0.52 -0.3
2,185,873 + +2.1
2,185,926 + +0.7
2,185,927 - +0.2
2,186,068 + PS417_10220 0.54 +1.8
2,186,068 + PS417_10220 0.54 +0.7
2,186,068 + PS417_10220 0.54 +0.5
2,186,130 + PS417_10220 0.79 +0.6
2,186,131 - -0.5
2,186,401 + PS417_10225 0.31 +0.2
2,186,401 + PS417_10225 0.31 +0.4
2,186,401 + PS417_10225 0.31 +0.6
2,186,402 - PS417_10225 0.31 +0.3
2,186,448 + PS417_10225 0.39 +1.3
2,186,499 + PS417_10225 0.49 +1.0
2,186,499 + PS417_10225 0.49 -0.8
2,186,542 - PS417_10225 0.57 +3.2
2,186,852 + +1.5
2,187,228 - -0.2
2,187,242 + +2.1
2,187,243 - +0.7
2,187,243 - -0.1
2,187,243 - +1.7
2,187,243 - +0.3
2,187,243 - -0.7
2,187,297 + +1.3
2,187,395 + +0.9
2,187,464 + -0.2
2,187,465 - +0.3
2,187,465 - +0.3
2,187,491 + +0.1
2,187,497 + -0.0
2,187,497 + -0.3
2,187,500 + -0.3
2,187,501 - -0.4
2,187,537 + -0.5
2,187,552 + +0.5
2,187,553 - +0.7
2,187,594 + -1.7
2,187,663 + +1.1
2,187,664 - +0.6
2,187,702 + +0.2
2,187,702 + +1.3
2,187,706 + -2.3
2,187,707 - +0.1
2,187,707 - -0.1
2,187,734 - +0.9

Or see this region's nucleotide sequence