Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05560 and PS417_05565 are separated by 305 nucleotides PS417_05565 and PS417_05570 are separated by 299 nucleotides
PS417_05560: PS417_05560 - ABC transporter, at 1,250,721 to 1,251,647
_05560
PS417_05565: PS417_05565 - glycerol-3-phosphate dehydrogenase, at 1,251,953 to 1,253,491
_05565
PS417_05570: PS417_05570 - DeoR faimly transcriptional regulator, at 1,253,791 to 1,254,546
_05570
Position (kb)
1251
1252
1253
1254 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1251.386 kb on - strand, within PS417_05560 at 1251.461 kb on - strand, within PS417_05560 at 1251.494 kb on - strand at 1251.494 kb on - strand at 1251.651 kb on + strand at 1251.652 kb on - strand at 1251.652 kb on - strand at 1251.652 kb on - strand at 1251.703 kb on - strand at 1251.703 kb on - strand at 1251.757 kb on + strand at 1251.800 kb on - strand at 1251.807 kb on - strand at 1251.866 kb on + strand at 1251.939 kb on - strand at 1251.943 kb on + strand at 1253.449 kb on - strand at 1253.669 kb on - strand at 1253.669 kb on - strand at 1253.669 kb on - strand at 1253.673 kb on - strand at 1253.673 kb on - strand at 1253.782 kb on - strand at 1253.793 kb on - strand at 1254.306 kb on + strand, within PS417_05570 at 1254.374 kb on + strand, within PS417_05570 at 1254.374 kb on + strand, within PS417_05570 at 1254.375 kb on - strand, within PS417_05570 at 1254.375 kb on - strand, within PS417_05570
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,251,386 - PS417_05560 0.72 +0.1 1,251,461 - PS417_05560 0.80 +2.2 1,251,494 - +3.5 1,251,494 - +0.8 1,251,651 + +1.6 1,251,652 - +0.6 1,251,652 - +0.1 1,251,652 - -0.7 1,251,703 - -0.6 1,251,703 - -0.1 1,251,757 + -1.3 1,251,800 - +0.3 1,251,807 - -3.0 1,251,866 + +0.2 1,251,939 - -0.8 1,251,943 + -0.7 1,253,449 - -4.7 1,253,669 - -0.4 1,253,669 - +1.1 1,253,669 - +0.1 1,253,673 - -0.4 1,253,673 - -1.7 1,253,782 - -0.4 1,253,793 - -0.7 1,254,306 + PS417_05570 0.68 -1.4 1,254,374 + PS417_05570 0.77 -0.2 1,254,374 + PS417_05570 0.77 +0.8 1,254,375 - PS417_05570 0.77 -0.8 1,254,375 - PS417_05570 0.77 +0.1
Or see this region's nucleotide sequence