Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26810 and PS417_26815 are separated by 232 nucleotides PS417_26815 and PS417_26820 overlap by 8 nucleotides
PS417_26810: PS417_26810 - cell division protein FtsY, at 5,788,471 to 5,789,856
_26810
PS417_26815: PS417_26815 - peptidase M16, at 5,790,089 to 5,791,444
_26815
PS417_26820: PS417_26820 - peptidase M16, at 5,791,437 to 5,792,927
_26820
Position (kb)
5790
5791
5792 Strain fitness (log2 ratio)
-1
0
1
2
3 at 5789.921 kb on - strand at 5789.965 kb on - strand at 5790.029 kb on - strand at 5790.261 kb on - strand, within PS417_26815 at 5790.432 kb on - strand, within PS417_26815 at 5790.786 kb on - strand, within PS417_26815 at 5790.992 kb on + strand at 5791.270 kb on + strand, within PS417_26815 at 5791.382 kb on + strand at 5791.383 kb on - strand at 5791.383 kb on - strand at 5791.807 kb on + strand, within PS417_26820 at 5791.807 kb on + strand, within PS417_26820 at 5791.807 kb on + strand, within PS417_26820 at 5791.808 kb on - strand, within PS417_26820 at 5791.808 kb on - strand, within PS417_26820 at 5791.911 kb on - strand, within PS417_26820 at 5791.929 kb on - strand, within PS417_26820 at 5792.167 kb on - strand, within PS417_26820 at 5792.258 kb on + strand, within PS417_26820 at 5792.388 kb on + strand, within PS417_26820 at 5792.389 kb on - strand, within PS417_26820 at 5792.389 kb on - strand, within PS417_26820
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,789,921 - +0.4 5,789,965 - -0.0 5,790,029 - +0.3 5,790,261 - PS417_26815 0.13 +0.2 5,790,432 - PS417_26815 0.25 +0.8 5,790,786 - PS417_26815 0.51 -1.1 5,790,992 + +2.8 5,791,270 + PS417_26815 0.87 -1.6 5,791,382 + +0.2 5,791,383 - +0.1 5,791,383 - -1.1 5,791,807 + PS417_26820 0.25 -0.7 5,791,807 + PS417_26820 0.25 +0.6 5,791,807 + PS417_26820 0.25 -0.2 5,791,808 - PS417_26820 0.25 +0.0 5,791,808 - PS417_26820 0.25 +0.5 5,791,911 - PS417_26820 0.32 -1.4 5,791,929 - PS417_26820 0.33 -0.2 5,792,167 - PS417_26820 0.49 -1.1 5,792,258 + PS417_26820 0.55 -0.1 5,792,388 + PS417_26820 0.64 +0.6 5,792,389 - PS417_26820 0.64 -0.3 5,792,389 - PS417_26820 0.64 -0.5
Or see this region's nucleotide sequence