Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22595 and PS417_22600 overlap by 4 nucleotides PS417_22600 and PS417_22605 are separated by 7 nucleotides
PS417_22595: PS417_22595 - hypothetical protein, at 4,892,741 to 4,893,910
_22595
PS417_22600: PS417_22600 - ATPase AAA, at 4,893,907 to 4,894,902
_22600
PS417_22605: PS417_22605 - membrane protein, at 4,894,910 to 4,896,241
_22605
Position (kb)
4893
4894
4895 Strain fitness (log2 ratio)
-1
0
1
2 at 4892.936 kb on - strand, within PS417_22595 at 4893.022 kb on - strand, within PS417_22595 at 4893.225 kb on - strand, within PS417_22595 at 4893.252 kb on - strand, within PS417_22595 at 4893.252 kb on - strand, within PS417_22595 at 4893.441 kb on - strand, within PS417_22595 at 4893.906 kb on + strand at 4893.907 kb on - strand at 4894.196 kb on + strand, within PS417_22600 at 4894.198 kb on + strand, within PS417_22600 at 4894.242 kb on - strand, within PS417_22600 at 4894.410 kb on + strand, within PS417_22600 at 4894.410 kb on + strand, within PS417_22600 at 4894.410 kb on + strand, within PS417_22600 at 4894.415 kb on - strand, within PS417_22600 at 4894.541 kb on + strand, within PS417_22600 at 4894.541 kb on + strand, within PS417_22600 at 4894.542 kb on - strand, within PS417_22600 at 4894.542 kb on - strand, within PS417_22600 at 4894.542 kb on - strand at 4894.542 kb on - strand, within PS417_22600 at 4894.542 kb on - strand, within PS417_22600 at 4894.634 kb on - strand, within PS417_22600 at 4894.816 kb on - strand at 4894.948 kb on - strand at 4894.948 kb on - strand at 4895.038 kb on - strand at 4895.151 kb on + strand, within PS417_22605 at 4895.152 kb on - strand, within PS417_22605 at 4895.152 kb on - strand, within PS417_22605 at 4895.193 kb on + strand, within PS417_22605 at 4895.194 kb on - strand, within PS417_22605 at 4895.194 kb on - strand, within PS417_22605 at 4895.194 kb on - strand, within PS417_22605 at 4895.194 kb on - strand, within PS417_22605 at 4895.199 kb on + strand, within PS417_22605 at 4895.361 kb on + strand, within PS417_22605 at 4895.427 kb on + strand, within PS417_22605 at 4895.442 kb on + strand, within PS417_22605 at 4895.726 kb on + strand, within PS417_22605 at 4895.727 kb on - strand, within PS417_22605 at 4895.727 kb on - strand, within PS417_22605 at 4895.813 kb on - strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.841 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.843 kb on + strand, within PS417_22605 at 4895.844 kb on - strand, within PS417_22605 at 4895.844 kb on - strand, within PS417_22605
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 4,892,936 - PS417_22595 0.17 -0.1 4,893,022 - PS417_22595 0.24 -0.3 4,893,225 - PS417_22595 0.41 -0.2 4,893,252 - PS417_22595 0.44 -0.5 4,893,252 - PS417_22595 0.44 -1.1 4,893,441 - PS417_22595 0.60 +0.4 4,893,906 + -0.6 4,893,907 - -0.5 4,894,196 + PS417_22600 0.29 +0.0 4,894,198 + PS417_22600 0.29 +0.6 4,894,242 - PS417_22600 0.34 -0.4 4,894,410 + PS417_22600 0.51 -1.5 4,894,410 + PS417_22600 0.51 +0.1 4,894,410 + PS417_22600 0.51 +0.8 4,894,415 - PS417_22600 0.51 -0.1 4,894,541 + PS417_22600 0.64 +0.8 4,894,541 + PS417_22600 0.64 -0.7 4,894,542 - PS417_22600 0.64 -0.1 4,894,542 - PS417_22600 0.64 +0.8 4,894,542 - +2.5 4,894,542 - PS417_22600 0.64 +0.5 4,894,542 - PS417_22600 0.64 +1.4 4,894,634 - PS417_22600 0.73 -0.2 4,894,816 - -0.2 4,894,948 - +0.3 4,894,948 - +1.3 4,895,038 - -0.2 4,895,151 + PS417_22605 0.18 -0.5 4,895,152 - PS417_22605 0.18 +0.6 4,895,152 - PS417_22605 0.18 -0.1 4,895,193 + PS417_22605 0.21 +0.1 4,895,194 - PS417_22605 0.21 -0.8 4,895,194 - PS417_22605 0.21 -1.1 4,895,194 - PS417_22605 0.21 -0.7 4,895,194 - PS417_22605 0.21 +0.1 4,895,199 + PS417_22605 0.22 -0.6 4,895,361 + PS417_22605 0.34 +0.7 4,895,427 + PS417_22605 0.39 +0.1 4,895,442 + PS417_22605 0.40 +0.4 4,895,726 + PS417_22605 0.61 +0.1 4,895,727 - PS417_22605 0.61 -0.1 4,895,727 - PS417_22605 0.61 -0.0 4,895,813 - PS417_22605 0.68 +0.4 4,895,841 + PS417_22605 0.70 -0.9 4,895,841 + PS417_22605 0.70 +0.1 4,895,841 + PS417_22605 0.70 -0.3 4,895,841 + PS417_22605 0.70 -0.8 4,895,843 + PS417_22605 0.70 +0.9 4,895,843 + PS417_22605 0.70 +2.3 4,895,843 + PS417_22605 0.70 -0.5 4,895,843 + PS417_22605 0.70 -0.1 4,895,843 + PS417_22605 0.70 +0.1 4,895,843 + PS417_22605 0.70 -0.5 4,895,844 - PS417_22605 0.70 +0.1 4,895,844 - PS417_22605 0.70 -0.3
Or see this region's nucleotide sequence