Strain Fitness in Pseudomonas simiae WCS417 around PS417_22600

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22595 and PS417_22600 overlap by 4 nucleotidesPS417_22600 and PS417_22605 are separated by 7 nucleotides PS417_22595: PS417_22595 - hypothetical protein, at 4,892,741 to 4,893,910 _22595 PS417_22600: PS417_22600 - ATPase AAA, at 4,893,907 to 4,894,902 _22600 PS417_22605: PS417_22605 - membrane protein, at 4,894,910 to 4,896,241 _22605 Position (kb) 4893 4894 4895Strain fitness (log2 ratio) -1 0 1 2at 4892.936 kb on - strand, within PS417_22595at 4893.022 kb on - strand, within PS417_22595at 4893.225 kb on - strand, within PS417_22595at 4893.252 kb on - strand, within PS417_22595at 4893.252 kb on - strand, within PS417_22595at 4893.441 kb on - strand, within PS417_22595at 4893.906 kb on + strandat 4893.907 kb on - strandat 4894.196 kb on + strand, within PS417_22600at 4894.198 kb on + strand, within PS417_22600at 4894.242 kb on - strand, within PS417_22600at 4894.410 kb on + strand, within PS417_22600at 4894.410 kb on + strand, within PS417_22600at 4894.410 kb on + strand, within PS417_22600at 4894.415 kb on - strand, within PS417_22600at 4894.541 kb on + strand, within PS417_22600at 4894.541 kb on + strand, within PS417_22600at 4894.542 kb on - strand, within PS417_22600at 4894.542 kb on - strand, within PS417_22600at 4894.542 kb on - strandat 4894.542 kb on - strand, within PS417_22600at 4894.542 kb on - strand, within PS417_22600at 4894.634 kb on - strand, within PS417_22600at 4894.816 kb on - strandat 4894.948 kb on - strandat 4894.948 kb on - strandat 4895.038 kb on - strandat 4895.151 kb on + strand, within PS417_22605at 4895.152 kb on - strand, within PS417_22605at 4895.152 kb on - strand, within PS417_22605at 4895.193 kb on + strand, within PS417_22605at 4895.194 kb on - strand, within PS417_22605at 4895.194 kb on - strand, within PS417_22605at 4895.194 kb on - strand, within PS417_22605at 4895.194 kb on - strand, within PS417_22605at 4895.199 kb on + strand, within PS417_22605at 4895.361 kb on + strand, within PS417_22605at 4895.427 kb on + strand, within PS417_22605at 4895.442 kb on + strand, within PS417_22605at 4895.726 kb on + strand, within PS417_22605at 4895.727 kb on - strand, within PS417_22605at 4895.727 kb on - strand, within PS417_22605at 4895.813 kb on - strand, within PS417_22605at 4895.841 kb on + strand, within PS417_22605at 4895.841 kb on + strand, within PS417_22605at 4895.841 kb on + strand, within PS417_22605at 4895.841 kb on + strand, within PS417_22605at 4895.843 kb on + strand, within PS417_22605at 4895.843 kb on + strand, within PS417_22605at 4895.843 kb on + strand, within PS417_22605at 4895.843 kb on + strand, within PS417_22605at 4895.843 kb on + strand, within PS417_22605at 4895.843 kb on + strand, within PS417_22605at 4895.844 kb on - strand, within PS417_22605at 4895.844 kb on - strand, within PS417_22605

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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4,892,936 - PS417_22595 0.17 -0.1
4,893,022 - PS417_22595 0.24 -0.3
4,893,225 - PS417_22595 0.41 -0.2
4,893,252 - PS417_22595 0.44 -0.5
4,893,252 - PS417_22595 0.44 -1.1
4,893,441 - PS417_22595 0.60 +0.4
4,893,906 + -0.6
4,893,907 - -0.5
4,894,196 + PS417_22600 0.29 +0.0
4,894,198 + PS417_22600 0.29 +0.6
4,894,242 - PS417_22600 0.34 -0.4
4,894,410 + PS417_22600 0.51 -1.5
4,894,410 + PS417_22600 0.51 +0.1
4,894,410 + PS417_22600 0.51 +0.8
4,894,415 - PS417_22600 0.51 -0.1
4,894,541 + PS417_22600 0.64 +0.8
4,894,541 + PS417_22600 0.64 -0.7
4,894,542 - PS417_22600 0.64 -0.1
4,894,542 - PS417_22600 0.64 +0.8
4,894,542 - +2.5
4,894,542 - PS417_22600 0.64 +0.5
4,894,542 - PS417_22600 0.64 +1.4
4,894,634 - PS417_22600 0.73 -0.2
4,894,816 - -0.2
4,894,948 - +0.3
4,894,948 - +1.3
4,895,038 - -0.2
4,895,151 + PS417_22605 0.18 -0.5
4,895,152 - PS417_22605 0.18 +0.6
4,895,152 - PS417_22605 0.18 -0.1
4,895,193 + PS417_22605 0.21 +0.1
4,895,194 - PS417_22605 0.21 -0.8
4,895,194 - PS417_22605 0.21 -1.1
4,895,194 - PS417_22605 0.21 -0.7
4,895,194 - PS417_22605 0.21 +0.1
4,895,199 + PS417_22605 0.22 -0.6
4,895,361 + PS417_22605 0.34 +0.7
4,895,427 + PS417_22605 0.39 +0.1
4,895,442 + PS417_22605 0.40 +0.4
4,895,726 + PS417_22605 0.61 +0.1
4,895,727 - PS417_22605 0.61 -0.1
4,895,727 - PS417_22605 0.61 -0.0
4,895,813 - PS417_22605 0.68 +0.4
4,895,841 + PS417_22605 0.70 -0.9
4,895,841 + PS417_22605 0.70 +0.1
4,895,841 + PS417_22605 0.70 -0.3
4,895,841 + PS417_22605 0.70 -0.8
4,895,843 + PS417_22605 0.70 +0.9
4,895,843 + PS417_22605 0.70 +2.3
4,895,843 + PS417_22605 0.70 -0.5
4,895,843 + PS417_22605 0.70 -0.1
4,895,843 + PS417_22605 0.70 +0.1
4,895,843 + PS417_22605 0.70 -0.5
4,895,844 - PS417_22605 0.70 +0.1
4,895,844 - PS417_22605 0.70 -0.3

Or see this region's nucleotide sequence