Strain Fitness in Pseudomonas simiae WCS417 around PS417_00710

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00695 and PS417_00700 are separated by 33 nucleotidesPS417_00700 and PS417_00705 are separated by 237 nucleotidesPS417_00705 and PS417_00710 overlap by 4 nucleotidesPS417_00710 and PS417_00715 overlap by 4 nucleotidesPS417_00715 and PS417_00720 overlap by 4 nucleotides PS417_00695: PS417_00695 - membrane protein, at 144,992 to 146,596 _00695 PS417_00700: PS417_00700 - hypothetical protein, at 146,630 to 146,875 _00700 PS417_00705: PS417_00705 - MarR family transcriptional regulator, at 147,113 to 147,523 _00705 PS417_00710: PS417_00710 - fusaric acid resistance protein, at 147,520 to 149,598 _00710 PS417_00715: PS417_00715 - required for octanoate transport, together with NodT, MFP, and FUSC proteins (PS417_00725, PS417_00720, PS417_00710) (from data), at 149,595 to 149,804 _00715 PS417_00720: PS417_00720 - membrane protein, at 149,801 to 150,691 _00720 Position (kb) 147 148 149 150Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 146.594 kb on + strandat 146.647 kb on + strandat 146.647 kb on + strandat 146.647 kb on + strandat 146.648 kb on - strandat 146.648 kb on - strandat 146.964 kb on - strandat 146.976 kb on - strandat 146.976 kb on - strandat 147.053 kb on + strandat 147.072 kb on - strandat 147.148 kb on + strandat 147.186 kb on - strand, within PS417_00705at 147.329 kb on + strand, within PS417_00705at 147.330 kb on - strand, within PS417_00705at 147.565 kb on + strandat 147.566 kb on - strandat 147.566 kb on - strandat 147.604 kb on + strandat 147.604 kb on + strandat 147.605 kb on - strandat 147.605 kb on - strandat 147.658 kb on + strandat 147.658 kb on + strandat 147.658 kb on + strandat 147.658 kb on + strandat 147.659 kb on - strandat 147.659 kb on - strandat 147.659 kb on - strandat 147.659 kb on - strandat 147.659 kb on - strandat 147.706 kb on + strandat 147.707 kb on - strandat 147.778 kb on + strand, within PS417_00710at 147.778 kb on + strand, within PS417_00710at 147.779 kb on - strand, within PS417_00710at 147.857 kb on - strand, within PS417_00710at 147.857 kb on - strand, within PS417_00710at 147.913 kb on - strand, within PS417_00710at 148.206 kb on - strand, within PS417_00710at 148.209 kb on + strand, within PS417_00710at 148.210 kb on - strand, within PS417_00710at 148.210 kb on - strand, within PS417_00710at 148.212 kb on + strand, within PS417_00710at 148.233 kb on + strand, within PS417_00710at 148.234 kb on - strand, within PS417_00710at 148.279 kb on + strand, within PS417_00710at 148.279 kb on + strand, within PS417_00710at 148.279 kb on + strand, within PS417_00710at 148.279 kb on + strand, within PS417_00710at 148.279 kb on + strand, within PS417_00710at 148.280 kb on - strand, within PS417_00710at 148.280 kb on - strand, within PS417_00710at 148.280 kb on - strand, within PS417_00710at 148.627 kb on + strand, within PS417_00710at 148.823 kb on - strand, within PS417_00710at 149.300 kb on - strand, within PS417_00710at 149.595 kb on - strandat 149.657 kb on + strand, within PS417_00715at 149.657 kb on + strand, within PS417_00715at 149.657 kb on + strand, within PS417_00715at 149.658 kb on - strand, within PS417_00715at 149.658 kb on - strandat 149.658 kb on - strand, within PS417_00715at 149.661 kb on + strand, within PS417_00715at 149.661 kb on + strand, within PS417_00715at 149.661 kb on + strand, within PS417_00715at 149.661 kb on + strand, within PS417_00715at 149.662 kb on - strand, within PS417_00715at 149.662 kb on - strand, within PS417_00715at 149.662 kb on - strand, within PS417_00715at 149.662 kb on - strand, within PS417_00715at 149.662 kb on - strand, within PS417_00715at 149.662 kb on - strand, within PS417_00715at 149.662 kb on - strand, within PS417_00715at 149.662 kb on - strand, within PS417_00715at 149.709 kb on + strand, within PS417_00715at 149.891 kb on + strand, within PS417_00720at 149.891 kb on + strand, within PS417_00720at 149.891 kb on + strandat 149.891 kb on + strand, within PS417_00720at 149.891 kb on + strand, within PS417_00720at 149.892 kb on - strand, within PS417_00720at 149.892 kb on - strand, within PS417_00720at 149.892 kb on - strand, within PS417_00720at 149.892 kb on - strand, within PS417_00720at 149.894 kb on + strand, within PS417_00720at 149.894 kb on + strand, within PS417_00720at 149.894 kb on + strand, within PS417_00720at 149.894 kb on + strand, within PS417_00720at 149.894 kb on + strand, within PS417_00720

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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146,594 + -0.4
146,647 + -0.9
146,647 + -0.5
146,647 + -0.3
146,648 - -2.0
146,648 - -1.2
146,964 - +0.4
146,976 - -1.4
146,976 - -0.4
147,053 + -0.2
147,072 - +0.2
147,148 + +0.6
147,186 - PS417_00705 0.18 -0.6
147,329 + PS417_00705 0.53 -1.8
147,330 - PS417_00705 0.53 -2.4
147,565 + +1.0
147,566 - +0.9
147,566 - -0.8
147,604 + -1.4
147,604 + +0.5
147,605 - +1.6
147,605 - -0.9
147,658 + -0.1
147,658 + -3.0
147,658 + -0.4
147,658 + -0.2
147,659 - -0.3
147,659 - +0.0
147,659 - -1.4
147,659 - -0.4
147,659 - -0.3
147,706 + +0.2
147,707 - +0.8
147,778 + PS417_00710 0.12 -0.3
147,778 + PS417_00710 0.12 -1.9
147,779 - PS417_00710 0.12 +1.0
147,857 - PS417_00710 0.16 +0.1
147,857 - PS417_00710 0.16 +0.1
147,913 - PS417_00710 0.19 -0.8
148,206 - PS417_00710 0.33 +0.0
148,209 + PS417_00710 0.33 -0.5
148,210 - PS417_00710 0.33 -0.4
148,210 - PS417_00710 0.33 +0.3
148,212 + PS417_00710 0.33 -0.1
148,233 + PS417_00710 0.34 -0.5
148,234 - PS417_00710 0.34 +0.0
148,279 + PS417_00710 0.37 -0.2
148,279 + PS417_00710 0.37 -0.4
148,279 + PS417_00710 0.37 -0.9
148,279 + PS417_00710 0.37 -0.6
148,279 + PS417_00710 0.37 +0.2
148,280 - PS417_00710 0.37 -0.7
148,280 - PS417_00710 0.37 -1.1
148,280 - PS417_00710 0.37 +0.5
148,627 + PS417_00710 0.53 +0.9
148,823 - PS417_00710 0.63 -1.5
149,300 - PS417_00710 0.86 -0.2
149,595 - -0.9
149,657 + PS417_00715 0.30 -0.5
149,657 + PS417_00715 0.30 +0.8
149,657 + PS417_00715 0.30 +0.1
149,658 - PS417_00715 0.30 -0.1
149,658 - +2.1
149,658 - PS417_00715 0.30 -0.9
149,661 + PS417_00715 0.31 -0.4
149,661 + PS417_00715 0.31 -0.8
149,661 + PS417_00715 0.31 +0.8
149,661 + PS417_00715 0.31 +0.3
149,662 - PS417_00715 0.32 +0.2
149,662 - PS417_00715 0.32 -1.6
149,662 - PS417_00715 0.32 -0.8
149,662 - PS417_00715 0.32 -0.1
149,662 - PS417_00715 0.32 +2.2
149,662 - PS417_00715 0.32 +1.1
149,662 - PS417_00715 0.32 -0.8
149,662 - PS417_00715 0.32 +0.7
149,709 + PS417_00715 0.54 +0.2
149,891 + PS417_00720 0.10 -0.1
149,891 + PS417_00720 0.10 -0.3
149,891 + +2.0
149,891 + PS417_00720 0.10 +0.1
149,891 + PS417_00720 0.10 +2.2
149,892 - PS417_00720 0.10 -0.7
149,892 - PS417_00720 0.10 +0.2
149,892 - PS417_00720 0.10 -0.6
149,892 - PS417_00720 0.10 -0.9
149,894 + PS417_00720 0.10 +0.3
149,894 + PS417_00720 0.10 -0.9
149,894 + PS417_00720 0.10 -1.0
149,894 + PS417_00720 0.10 +0.2
149,894 + PS417_00720 0.10 -0.9

Or see this region's nucleotide sequence