Strain Fitness in Pseudomonas simiae WCS417 around PS417_05255

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05250 and PS417_05255 are separated by 11 nucleotidesPS417_05255 and PS417_05260 are separated by 140 nucleotides PS417_05250: PS417_05250 - hypothetical protein, at 1,164,883 to 1,166,187 _05250 PS417_05255: PS417_05255 - hypothetical protein, at 1,166,199 to 1,167,077 _05255 PS417_05260: PS417_05260 - MFS transporter, at 1,167,218 to 1,168,558 _05260 Position (kb) 1166 1167 1168Strain fitness (log2 ratio) -2 -1 0 1 2at 1165.445 kb on - strand, within PS417_05250at 1165.626 kb on - strand, within PS417_05250at 1165.817 kb on + strand, within PS417_05250at 1166.204 kb on + strandat 1166.516 kb on + strand, within PS417_05255at 1166.566 kb on - strand, within PS417_05255at 1166.632 kb on - strand, within PS417_05255at 1166.667 kb on + strand, within PS417_05255at 1166.668 kb on - strand, within PS417_05255at 1166.670 kb on + strand, within PS417_05255at 1166.670 kb on + strand, within PS417_05255at 1166.670 kb on + strand, within PS417_05255at 1166.671 kb on - strand, within PS417_05255at 1166.707 kb on - strand, within PS417_05255at 1167.228 kb on - strandat 1167.330 kb on - strandat 1167.330 kb on - strandat 1167.330 kb on - strandat 1167.494 kb on - strand, within PS417_05260at 1167.494 kb on - strand, within PS417_05260at 1167.494 kb on - strand, within PS417_05260at 1167.627 kb on - strand, within PS417_05260at 1167.627 kb on - strand, within PS417_05260at 1167.641 kb on + strand, within PS417_05260at 1167.642 kb on - strand, within PS417_05260at 1167.642 kb on - strand, within PS417_05260at 1167.642 kb on - strand, within PS417_05260at 1167.685 kb on + strand, within PS417_05260at 1167.689 kb on + strand, within PS417_05260at 1167.689 kb on + strandat 1167.690 kb on - strand, within PS417_05260at 1167.690 kb on - strand, within PS417_05260at 1167.691 kb on + strand, within PS417_05260at 1167.697 kb on - strand, within PS417_05260at 1167.927 kb on - strand, within PS417_05260

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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1,165,445 - PS417_05250 0.43 -0.2
1,165,626 - PS417_05250 0.57 -0.4
1,165,817 + PS417_05250 0.72 +1.3
1,166,204 + +0.0
1,166,516 + PS417_05255 0.36 -0.7
1,166,566 - PS417_05255 0.42 -2.0
1,166,632 - PS417_05255 0.49 +0.8
1,166,667 + PS417_05255 0.53 -1.3
1,166,668 - PS417_05255 0.53 -0.0
1,166,670 + PS417_05255 0.54 -1.1
1,166,670 + PS417_05255 0.54 -0.3
1,166,670 + PS417_05255 0.54 -0.0
1,166,671 - PS417_05255 0.54 -1.2
1,166,707 - PS417_05255 0.58 +0.8
1,167,228 - +0.7
1,167,330 - +0.9
1,167,330 - -0.1
1,167,330 - -0.8
1,167,494 - PS417_05260 0.21 +0.0
1,167,494 - PS417_05260 0.21 +0.7
1,167,494 - PS417_05260 0.21 -0.2
1,167,627 - PS417_05260 0.30 +0.2
1,167,627 - PS417_05260 0.30 -0.9
1,167,641 + PS417_05260 0.32 +0.4
1,167,642 - PS417_05260 0.32 -0.1
1,167,642 - PS417_05260 0.32 +0.5
1,167,642 - PS417_05260 0.32 +0.8
1,167,685 + PS417_05260 0.35 -0.8
1,167,689 + PS417_05260 0.35 -0.7
1,167,689 + +1.9
1,167,690 - PS417_05260 0.35 +0.2
1,167,690 - PS417_05260 0.35 +1.0
1,167,691 + PS417_05260 0.35 -0.1
1,167,697 - PS417_05260 0.36 -1.1
1,167,927 - PS417_05260 0.53 -0.5

Or see this region's nucleotide sequence