Strain Fitness in Pseudomonas simiae WCS417 around PS417_17375

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17370 and PS417_17375 are separated by 64 nucleotidesPS417_17375 and PS417_17380 are separated by 1 nucleotides PS417_17370: PS417_17370 - C4-dicarboxylate ABC transporter, at 3,794,342 to 3,795,304 _17370 PS417_17375: PS417_17375 - C4-dicarboxylate ABC transporter, at 3,795,369 to 3,795,896 _17375 PS417_17380: PS417_17380 - membrane protein, at 3,795,898 to 3,797,178 _17380 Position (kb) 3795 3796Strain fitness (log2 ratio) -2 -1 0 1 2at 3794.787 kb on - strand, within PS417_17370at 3794.842 kb on - strand, within PS417_17370at 3795.005 kb on + strand, within PS417_17370at 3795.006 kb on - strand, within PS417_17370at 3795.008 kb on + strand, within PS417_17370at 3795.009 kb on - strand, within PS417_17370at 3795.224 kb on + strandat 3795.224 kb on + strandat 3795.224 kb on + strandat 3795.225 kb on - strandat 3795.225 kb on - strandat 3795.225 kb on - strandat 3795.406 kb on - strandat 3795.416 kb on + strandat 3795.571 kb on - strand, within PS417_17375at 3795.768 kb on + strand, within PS417_17375at 3795.768 kb on + strand, within PS417_17375at 3795.769 kb on - strand, within PS417_17375at 3796.356 kb on + strand, within PS417_17380at 3796.357 kb on - strand, within PS417_17380at 3796.357 kb on - strand, within PS417_17380at 3796.369 kb on + strand, within PS417_17380at 3796.370 kb on - strand, within PS417_17380

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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3,794,787 - PS417_17370 0.46 -0.4
3,794,842 - PS417_17370 0.52 +0.3
3,795,005 + PS417_17370 0.69 -2.1
3,795,006 - PS417_17370 0.69 -0.8
3,795,008 + PS417_17370 0.69 -0.9
3,795,009 - PS417_17370 0.69 +0.2
3,795,224 + +1.8
3,795,224 + +2.1
3,795,224 + +0.7
3,795,225 - -1.8
3,795,225 - +0.3
3,795,225 - +0.3
3,795,406 - -0.6
3,795,416 + +1.8
3,795,571 - PS417_17375 0.38 -2.7
3,795,768 + PS417_17375 0.76 -0.6
3,795,768 + PS417_17375 0.76 -1.5
3,795,769 - PS417_17375 0.76 +2.1
3,796,356 + PS417_17380 0.36 +0.4
3,796,357 - PS417_17380 0.36 -1.1
3,796,357 - PS417_17380 0.36 +0.2
3,796,369 + PS417_17380 0.37 +0.6
3,796,370 - PS417_17380 0.37 +0.1

Or see this region's nucleotide sequence