Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16455 and PS417_16460 are separated by 88 nucleotides PS417_16460 and PS417_16465 are separated by 105 nucleotides
PS417_16455: PS417_16455 - hypothetical protein, at 3,594,117 to 3,595,118
_16455
PS417_16460: PS417_16460 - hypothetical protein, at 3,595,207 to 3,596,202
_16460
PS417_16465: PS417_16465 - sirohydrochlorin ferrochelatase, at 3,596,308 to 3,597,702
_16465
Position (kb)
3595
3596
3597 Strain fitness (log2 ratio)
-2
-1
0
1 at 3594.409 kb on - strand, within PS417_16455 at 3594.522 kb on + strand, within PS417_16455 at 3594.523 kb on - strand, within PS417_16455 at 3594.746 kb on + strand, within PS417_16455 at 3594.746 kb on + strand, within PS417_16455 at 3594.746 kb on + strand, within PS417_16455 at 3594.809 kb on - strand, within PS417_16455 at 3594.809 kb on - strand, within PS417_16455 at 3595.116 kb on + strand at 3595.149 kb on + strand at 3595.149 kb on + strand at 3595.168 kb on + strand at 3595.188 kb on - strand at 3595.190 kb on + strand at 3595.375 kb on + strand, within PS417_16460 at 3595.376 kb on - strand, within PS417_16460 at 3595.376 kb on - strand, within PS417_16460 at 3595.455 kb on - strand, within PS417_16460 at 3595.698 kb on + strand, within PS417_16460 at 3595.760 kb on - strand, within PS417_16460 at 3595.781 kb on + strand, within PS417_16460 at 3595.817 kb on - strand, within PS417_16460 at 3595.900 kb on + strand, within PS417_16460 at 3595.900 kb on + strand, within PS417_16460 at 3595.919 kb on + strand, within PS417_16460 at 3595.919 kb on + strand, within PS417_16460 at 3595.920 kb on - strand, within PS417_16460 at 3595.957 kb on + strand, within PS417_16460 at 3595.957 kb on + strand, within PS417_16460 at 3595.957 kb on + strand, within PS417_16460 at 3595.957 kb on + strand, within PS417_16460 at 3595.958 kb on - strand, within PS417_16460 at 3595.960 kb on + strand, within PS417_16460 at 3595.960 kb on + strand, within PS417_16460 at 3595.961 kb on - strand, within PS417_16460 at 3595.961 kb on - strand, within PS417_16460 at 3596.032 kb on + strand, within PS417_16460 at 3596.032 kb on + strand, within PS417_16460 at 3596.032 kb on + strand, within PS417_16460 at 3596.032 kb on + strand, within PS417_16460 at 3596.033 kb on - strand, within PS417_16460 at 3596.033 kb on - strand, within PS417_16460 at 3596.033 kb on - strand, within PS417_16460 at 3596.033 kb on - strand, within PS417_16460 at 3596.033 kb on - strand, within PS417_16460 at 3596.033 kb on - strand, within PS417_16460 at 3596.033 kb on - strand, within PS417_16460 at 3596.033 kb on - strand, within PS417_16460 at 3596.086 kb on + strand, within PS417_16460 at 3596.087 kb on - strand, within PS417_16460 at 3596.087 kb on - strand, within PS417_16460 at 3596.089 kb on + strand, within PS417_16460 at 3596.090 kb on - strand, within PS417_16460 at 3596.090 kb on - strand, within PS417_16460 at 3596.090 kb on - strand, within PS417_16460 at 3596.090 kb on - strand, within PS417_16460 at 3596.273 kb on + strand at 3596.447 kb on - strand at 3596.558 kb on + strand, within PS417_16465 at 3596.558 kb on + strand, within PS417_16465 at 3596.558 kb on + strand, within PS417_16465 at 3596.587 kb on + strand, within PS417_16465 at 3596.587 kb on + strand, within PS417_16465 at 3596.588 kb on - strand, within PS417_16465 at 3596.588 kb on - strand, within PS417_16465 at 3596.637 kb on + strand, within PS417_16465 at 3596.688 kb on - strand, within PS417_16465 at 3596.688 kb on - strand, within PS417_16465 at 3597.047 kb on + strand, within PS417_16465 at 3597.048 kb on - strand, within PS417_16465
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 3,594,409 - PS417_16455 0.29 -0.1 3,594,522 + PS417_16455 0.40 -0.0 3,594,523 - PS417_16455 0.41 -0.2 3,594,746 + PS417_16455 0.63 -1.3 3,594,746 + PS417_16455 0.63 +0.6 3,594,746 + PS417_16455 0.63 +0.1 3,594,809 - PS417_16455 0.69 -0.4 3,594,809 - PS417_16455 0.69 -0.2 3,595,116 + -0.2 3,595,149 + -2.0 3,595,149 + -1.1 3,595,168 + -0.4 3,595,188 - +0.6 3,595,190 + -0.1 3,595,375 + PS417_16460 0.17 +0.6 3,595,376 - PS417_16460 0.17 +0.9 3,595,376 - PS417_16460 0.17 +0.5 3,595,455 - PS417_16460 0.25 +0.3 3,595,698 + PS417_16460 0.49 +0.1 3,595,760 - PS417_16460 0.56 -0.7 3,595,781 + PS417_16460 0.58 -1.3 3,595,817 - PS417_16460 0.61 -1.1 3,595,900 + PS417_16460 0.70 -1.3 3,595,900 + PS417_16460 0.70 -0.0 3,595,919 + PS417_16460 0.71 +0.5 3,595,919 + PS417_16460 0.71 +0.1 3,595,920 - PS417_16460 0.72 +0.1 3,595,957 + PS417_16460 0.75 +1.4 3,595,957 + PS417_16460 0.75 -0.1 3,595,957 + PS417_16460 0.75 -0.6 3,595,957 + PS417_16460 0.75 -0.1 3,595,958 - PS417_16460 0.75 -0.7 3,595,960 + PS417_16460 0.76 +1.1 3,595,960 + PS417_16460 0.76 +0.5 3,595,961 - PS417_16460 0.76 +0.2 3,595,961 - PS417_16460 0.76 -0.1 3,596,032 + PS417_16460 0.83 +0.3 3,596,032 + PS417_16460 0.83 -0.1 3,596,032 + PS417_16460 0.83 +0.4 3,596,032 + PS417_16460 0.83 +0.5 3,596,033 - PS417_16460 0.83 -2.1 3,596,033 - PS417_16460 0.83 -1.1 3,596,033 - PS417_16460 0.83 -0.4 3,596,033 - PS417_16460 0.83 +0.1 3,596,033 - PS417_16460 0.83 +0.5 3,596,033 - PS417_16460 0.83 -0.3 3,596,033 - PS417_16460 0.83 -1.3 3,596,033 - PS417_16460 0.83 +0.4 3,596,086 + PS417_16460 0.88 -0.8 3,596,087 - PS417_16460 0.88 -0.4 3,596,087 - PS417_16460 0.88 +0.7 3,596,089 + PS417_16460 0.89 -1.1 3,596,090 - PS417_16460 0.89 +0.9 3,596,090 - PS417_16460 0.89 +0.1 3,596,090 - PS417_16460 0.89 -1.1 3,596,090 - PS417_16460 0.89 +0.4 3,596,273 + -0.5 3,596,447 - -0.6 3,596,558 + PS417_16465 0.18 -0.4 3,596,558 + PS417_16465 0.18 -0.8 3,596,558 + PS417_16465 0.18 -0.4 3,596,587 + PS417_16465 0.20 +0.2 3,596,587 + PS417_16465 0.20 -1.2 3,596,588 - PS417_16465 0.20 -0.7 3,596,588 - PS417_16465 0.20 +0.1 3,596,637 + PS417_16465 0.24 +0.3 3,596,688 - PS417_16465 0.27 +0.0 3,596,688 - PS417_16465 0.27 -0.3 3,597,047 + PS417_16465 0.53 -2.7 3,597,048 - PS417_16465 0.53 -1.2
Or see this region's nucleotide sequence