Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11955 and PS417_11960 are separated by 140 nucleotides PS417_11960 and PS417_11965 are separated by 122 nucleotides PS417_11965 and PS417_11970 are separated by 4 nucleotides PS417_11970 and PS417_11975 are separated by 269 nucleotides
PS417_11955: PS417_11955 - ligand-gated channel, at 2,601,828 to 2,604,329
_11955
PS417_11960: PS417_11960 - Valyl-tRNA synthetase, at 2,604,470 to 2,604,799
_11960
PS417_11965: PS417_11965 - GCN5 family acetyltransferase, at 2,604,922 to 2,605,368
_11965
PS417_11970: PS417_11970 - hypothetical protein, at 2,605,373 to 2,605,612
_11970
PS417_11975: PS417_11975 - diguanylate cyclase, at 2,605,882 to 2,606,826
_11975
Position (kb)
2604
2605
2606 Strain fitness (log2 ratio)
-2
-1
0
1 at 2603.998 kb on - strand, within PS417_11955 at 2604.036 kb on + strand, within PS417_11955 at 2604.091 kb on - strand at 2604.142 kb on - strand at 2604.246 kb on + strand at 2604.247 kb on - strand at 2604.261 kb on + strand at 2604.262 kb on - strand at 2604.262 kb on - strand at 2604.267 kb on + strand at 2604.318 kb on + strand at 2604.560 kb on + strand, within PS417_11960 at 2604.560 kb on + strand, within PS417_11960 at 2604.560 kb on + strand, within PS417_11960 at 2604.560 kb on + strand, within PS417_11960 at 2604.560 kb on + strand, within PS417_11960 at 2604.561 kb on - strand, within PS417_11960 at 2604.561 kb on - strand, within PS417_11960 at 2604.561 kb on - strand, within PS417_11960 at 2604.561 kb on - strand, within PS417_11960 at 2604.561 kb on - strand, within PS417_11960 at 2604.713 kb on + strand, within PS417_11960 at 2604.714 kb on - strand, within PS417_11960 at 2604.780 kb on - strand at 2604.806 kb on - strand at 2604.884 kb on - strand at 2604.884 kb on - strand at 2604.892 kb on - strand at 2605.172 kb on - strand, within PS417_11965 at 2605.223 kb on + strand, within PS417_11965 at 2605.676 kb on + strand at 2605.785 kb on - strand at 2605.813 kb on - strand at 2605.845 kb on - strand at 2605.938 kb on - strand at 2606.203 kb on - strand at 2606.203 kb on - strand, within PS417_11975 at 2606.239 kb on - strand, within PS417_11975 at 2606.258 kb on + strand, within PS417_11975 at 2606.259 kb on - strand, within PS417_11975 at 2606.302 kb on + strand, within PS417_11975
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,603,998 - PS417_11955 0.87 +0.0 2,604,036 + PS417_11955 0.88 +0.6 2,604,091 - -0.0 2,604,142 - -0.4 2,604,246 + -1.1 2,604,247 - +0.7 2,604,261 + +0.2 2,604,262 - +0.5 2,604,262 - +0.2 2,604,267 + -0.2 2,604,318 + -2.1 2,604,560 + PS417_11960 0.27 -0.8 2,604,560 + PS417_11960 0.27 -0.7 2,604,560 + PS417_11960 0.27 +0.5 2,604,560 + PS417_11960 0.27 +0.6 2,604,560 + PS417_11960 0.27 +0.2 2,604,561 - PS417_11960 0.28 +0.3 2,604,561 - PS417_11960 0.28 +0.3 2,604,561 - PS417_11960 0.28 +0.7 2,604,561 - PS417_11960 0.28 -0.1 2,604,561 - PS417_11960 0.28 -1.0 2,604,713 + PS417_11960 0.74 +0.5 2,604,714 - PS417_11960 0.74 -0.2 2,604,780 - +0.1 2,604,806 - -1.2 2,604,884 - +0.6 2,604,884 - -0.9 2,604,892 - +1.0 2,605,172 - PS417_11965 0.56 +0.5 2,605,223 + PS417_11965 0.67 -0.6 2,605,676 + +1.1 2,605,785 - -0.7 2,605,813 - -0.2 2,605,845 - +0.2 2,605,938 - +0.2 2,606,203 - -2.3 2,606,203 - PS417_11975 0.34 +0.8 2,606,239 - PS417_11975 0.38 -0.5 2,606,258 + PS417_11975 0.40 +0.6 2,606,259 - PS417_11975 0.40 +0.2 2,606,302 + PS417_11975 0.44 -0.7
Or see this region's nucleotide sequence