Strain Fitness in Pseudomonas putida KT2440 around PP_0314

Experiment: Temperature shift 30_to_21; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0313 and PP_0314 are separated by 601 nucleotidesPP_0314 and PP_0315 are separated by 64 nucleotides PP_0313: PP_0313 - putative electron transfer flavoprotein beta subunit, at 375,954 to 376,724 _0313 PP_0314: PP_0314 - conserved protein of unknown function, at 377,326 to 378,057 _0314 PP_0315: PP_0315 - putative glycine-betaine dioxygenase subunit, at 378,122 to 379,414 _0315 Position (kb) 377 378 379Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 376.736 kb on + strandat 376.736 kb on + strandat 376.842 kb on - strandat 376.861 kb on - strandat 376.937 kb on + strandat 376.937 kb on + strandat 377.075 kb on - strandat 377.205 kb on + strandat 377.267 kb on + strandat 377.267 kb on + strandat 377.267 kb on + strandat 377.291 kb on - strandat 377.312 kb on + strandat 377.312 kb on + strandat 377.313 kb on - strandat 377.313 kb on - strandat 377.398 kb on + strandat 377.407 kb on + strand, within PP_0314at 377.408 kb on - strand, within PP_0314at 377.423 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.482 kb on + strandat 377.482 kb on + strand, within PP_0314at 377.483 kb on - strand, within PP_0314at 377.510 kb on - strand, within PP_0314at 377.534 kb on + strand, within PP_0314at 377.534 kb on + strand, within PP_0314at 377.549 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.622 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.689 kb on - strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.716 kb on + strand, within PP_0314at 377.716 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.722 kb on - strand, within PP_0314at 377.722 kb on - strand, within PP_0314at 377.745 kb on + strand, within PP_0314at 377.745 kb on + strand, within PP_0314at 377.746 kb on - strand, within PP_0314at 377.746 kb on - strand, within PP_0314at 377.783 kb on - strand, within PP_0314at 377.868 kb on + strand, within PP_0314at 377.868 kb on + strand, within PP_0314at 377.868 kb on + strand, within PP_0314at 377.869 kb on - strand, within PP_0314at 377.869 kb on - strand, within PP_0314at 377.869 kb on - strand, within PP_0314at 377.874 kb on + strand, within PP_0314at 377.875 kb on - strand, within PP_0314at 377.875 kb on - strand, within PP_0314at 377.895 kb on + strand, within PP_0314at 377.896 kb on - strand, within PP_0314at 377.965 kb on + strand, within PP_0314at 377.966 kb on - strand, within PP_0314at 377.966 kb on - strand, within PP_0314at 377.966 kb on - strand, within PP_0314at 378.028 kb on + strandat 378.028 kb on + strandat 378.028 kb on + strandat 378.035 kb on + strandat 378.035 kb on + strandat 378.036 kb on - strandat 378.036 kb on - strandat 378.036 kb on - strandat 378.040 kb on - strandat 378.048 kb on - strandat 378.120 kb on + strandat 378.121 kb on - strandat 378.124 kb on - strandat 378.124 kb on - strandat 378.124 kb on - strandat 378.124 kb on - strandat 378.147 kb on + strandat 378.147 kb on + strandat 378.192 kb on + strandat 378.193 kb on - strandat 378.193 kb on - strandat 378.193 kb on - strandat 378.226 kb on - strandat 378.348 kb on + strand, within PP_0315at 378.769 kb on - strand, within PP_0315at 378.813 kb on + strand, within PP_0315at 378.823 kb on + strand, within PP_0315at 378.823 kb on + strand, within PP_0315at 378.824 kb on - strand, within PP_0315at 378.858 kb on + strand, within PP_0315at 378.858 kb on + strand, within PP_0315at 378.858 kb on + strand, within PP_0315at 378.859 kb on - strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 379.041 kb on + strand, within PP_0315at 379.041 kb on + strand, within PP_0315at 379.041 kb on + strand, within PP_0315at 379.042 kb on - strand, within PP_0315at 379.042 kb on - strand, within PP_0315

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Per-strain Table

Position Strand Gene LocusTag Fraction Temperature shift 30_to_21; with MOPS
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376,736 + -3.6
376,736 + +0.2
376,842 - -0.3
376,861 - +1.0
376,937 + +0.9
376,937 + -0.7
377,075 - +1.4
377,205 + +0.6
377,267 + -1.5
377,267 + -0.3
377,267 + -0.8
377,291 - +0.0
377,312 + -3.9
377,312 + +1.0
377,313 - -1.1
377,313 - -3.0
377,398 + -0.2
377,407 + PP_0314 0.11 -2.3
377,408 - PP_0314 0.11 +1.2
377,423 + PP_0314 0.13 +0.9
377,478 + PP_0314 0.21 -3.6
377,478 + PP_0314 0.21 +0.0
377,478 + PP_0314 0.21 -2.4
377,479 - PP_0314 0.21 +0.3
377,479 - PP_0314 0.21 +0.4
377,479 - PP_0314 0.21 +1.7
377,479 - PP_0314 0.21 +1.0
377,482 + -0.0
377,482 + PP_0314 0.21 -1.4
377,483 - PP_0314 0.21 -0.4
377,510 - PP_0314 0.25 -1.1
377,534 + PP_0314 0.28 -1.6
377,534 + PP_0314 0.28 -0.3
377,549 + PP_0314 0.30 -1.4
377,581 + PP_0314 0.35 -3.4
377,581 + PP_0314 0.35 -3.4
377,581 + PP_0314 0.35 +1.9
377,622 + PP_0314 0.40 -2.4
377,684 + PP_0314 0.49 +1.6
377,684 + PP_0314 0.49 -0.4
377,684 + PP_0314 0.49 +0.8
377,685 - PP_0314 0.49 -2.1
377,685 - PP_0314 0.49 -2.9
377,685 - PP_0314 0.49 +0.1
377,689 - PP_0314 0.50 -0.3
377,690 + PP_0314 0.50 -0.0
377,690 + PP_0314 0.50 +0.5
377,690 + PP_0314 0.50 -3.5
377,690 + PP_0314 0.50 -2.1
377,690 + PP_0314 0.50 -3.1
377,691 - PP_0314 0.50 -0.3
377,691 - PP_0314 0.50 +0.7
377,691 - PP_0314 0.50 -0.3
377,716 + PP_0314 0.53 -0.4
377,716 + PP_0314 0.53 +0.4
377,721 + PP_0314 0.54 -1.8
377,721 + PP_0314 0.54 -1.3
377,721 + PP_0314 0.54 -2.4
377,722 - PP_0314 0.54 +0.3
377,722 - PP_0314 0.54 -3.6
377,745 + PP_0314 0.57 +0.4
377,745 + PP_0314 0.57 +0.3
377,746 - PP_0314 0.57 -2.9
377,746 - PP_0314 0.57 -0.1
377,783 - PP_0314 0.62 -1.8
377,868 + PP_0314 0.74 -4.2
377,868 + PP_0314 0.74 +0.7
377,868 + PP_0314 0.74 -3.1
377,869 - PP_0314 0.74 -1.8
377,869 - PP_0314 0.74 +0.1
377,869 - PP_0314 0.74 -1.6
377,874 + PP_0314 0.75 +1.6
377,875 - PP_0314 0.75 -1.0
377,875 - PP_0314 0.75 +1.1
377,895 + PP_0314 0.78 -0.2
377,896 - PP_0314 0.78 +0.4
377,965 + PP_0314 0.87 -0.3
377,966 - PP_0314 0.87 -3.5
377,966 - PP_0314 0.87 -4.3
377,966 - PP_0314 0.87 +1.0
378,028 + -3.4
378,028 + +1.1
378,028 + +1.3
378,035 + +0.7
378,035 + +1.6
378,036 - -1.0
378,036 - -0.7
378,036 - -0.7
378,040 - +0.7
378,048 - -2.8
378,120 + +0.8
378,121 - -4.3
378,124 - -0.5
378,124 - -2.5
378,124 - +1.1
378,124 - +1.4
378,147 + +0.8
378,147 + +2.1
378,192 + -2.9
378,193 - -4.4
378,193 - +0.2
378,193 - -1.8
378,226 - -1.6
378,348 + PP_0315 0.17 -4.2
378,769 - PP_0315 0.50 +1.5
378,813 + PP_0315 0.53 -1.3
378,823 + PP_0315 0.54 -0.3
378,823 + PP_0315 0.54 +0.2
378,824 - PP_0315 0.54 +0.1
378,858 + PP_0315 0.57 -2.7
378,858 + PP_0315 0.57 -2.4
378,858 + PP_0315 0.57 -0.5
378,859 - PP_0315 0.57 -3.4
378,870 + PP_0315 0.58 +0.9
378,870 + PP_0315 0.58 -0.3
378,870 + PP_0315 0.58 -2.6
378,870 + PP_0315 0.58 -3.0
378,870 + PP_0315 0.58 +0.9
378,870 + PP_0315 0.58 +0.3
378,871 - PP_0315 0.58 +2.0
378,871 - PP_0315 0.58 +0.5
378,871 - PP_0315 0.58 -1.0
378,871 - PP_0315 0.58 +0.0
379,041 + PP_0315 0.71 -2.5
379,041 + PP_0315 0.71 -3.2
379,041 + PP_0315 0.71 +0.9
379,042 - PP_0315 0.71 +1.0
379,042 - PP_0315 0.71 -0.2

Or see this region's nucleotide sequence