Strain Fitness in Pseudomonas simiae WCS417 around PS417_08720

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08715 and PS417_08720 overlap by 4 nucleotidesPS417_08720 and PS417_08725 overlap by 4 nucleotidesPS417_08725 and PS417_08730 overlap by 8 nucleotides PS417_08715: PS417_08715 - cytochrome C biogenesis protein CcmF, at 1,898,088 to 1,900,076 _08715 PS417_08720: PS417_08720 - thiol:disulfide interchange protein, at 1,900,073 to 1,900,609 _08720 PS417_08725: PS417_08725 - cytochrome C, at 1,900,606 to 1,901,079 _08725 PS417_08730: PS417_08730 - cytochrome C, at 1,901,072 to 1,902,259 _08730 Position (kb) 1900 1901Strain fitness (log2 ratio) -2 -1 0 1at 1901.550 kb on - strand, within PS417_08730

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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1,901,550 - PS417_08730 0.40 -1.9

Or see this region's nucleotide sequence