Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27920 and PS417_27925 overlap by 4 nucleotides PS417_27925 and PS417_27930 are separated by 6 nucleotides
PS417_27920: PS417_27920 - type VI secretion protein IcmF, at 6,020,004 to 6,023,504
_27920
PS417_27925: PS417_27925 - hypothetical protein, at 6,023,501 to 6,024,790
_27925
PS417_27930: PS417_27930 - type VI secretion protein, at 6,024,797 to 6,026,131
_27930
Position (kb)
6023
6024
6025 Strain fitness (log2 ratio)
-2
-1
0
1 at 6022.765 kb on + strand, within PS417_27920 at 6022.766 kb on - strand, within PS417_27920 at 6022.766 kb on - strand, within PS417_27920 at 6023.134 kb on + strand, within PS417_27920 at 6023.135 kb on - strand, within PS417_27920 at 6023.135 kb on - strand, within PS417_27920 at 6023.247 kb on - strand at 6023.799 kb on + strand, within PS417_27925 at 6023.906 kb on - strand, within PS417_27925 at 6024.295 kb on - strand, within PS417_27925 at 6024.295 kb on - strand, within PS417_27925 at 6024.313 kb on - strand, within PS417_27925 at 6024.919 kb on - strand at 6024.919 kb on - strand at 6025.152 kb on + strand, within PS417_27930 at 6025.575 kb on + strand, within PS417_27930 at 6025.575 kb on + strand, within PS417_27930 at 6025.576 kb on - strand, within PS417_27930 at 6025.576 kb on - strand, within PS417_27930 at 6025.590 kb on - strand, within PS417_27930 at 6025.761 kb on + strand, within PS417_27930
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 6,022,765 + PS417_27920 0.79 +0.2 6,022,766 - PS417_27920 0.79 +1.2 6,022,766 - PS417_27920 0.79 -0.0 6,023,134 + PS417_27920 0.89 -0.7 6,023,135 - PS417_27920 0.89 -2.7 6,023,135 - PS417_27920 0.89 +1.1 6,023,247 - +1.3 6,023,799 + PS417_27925 0.23 -0.9 6,023,906 - PS417_27925 0.31 -0.9 6,024,295 - PS417_27925 0.62 -0.8 6,024,295 - PS417_27925 0.62 -2.5 6,024,313 - PS417_27925 0.63 -0.0 6,024,919 - -0.1 6,024,919 - -0.5 6,025,152 + PS417_27930 0.27 -0.0 6,025,575 + PS417_27930 0.58 +0.9 6,025,575 + PS417_27930 0.58 -0.4 6,025,576 - PS417_27930 0.58 -0.5 6,025,576 - PS417_27930 0.58 +1.0 6,025,590 - PS417_27930 0.59 -0.2 6,025,761 + PS417_27930 0.72 +0.0
Or see this region's nucleotide sequence