Strain Fitness in Pseudomonas putida KT2440 around PP_4958

Experiment: Temperature shift 10_to_30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4955 and PP_4956 are separated by 153 nucleotidesPP_4956 and PP_4957 are separated by 23 nucleotidesPP_4957 and PP_4958 are separated by 12 nucleotidesPP_4958 and PP_4959 are separated by 0 nucleotides PP_4955: PP_4955 - conserved exported protein of unknown function, at 5,646,850 to 5,647,587 _4955 PP_4956: PP_4956 - putative acyltransferase, at 5,647,741 to 5,648,193 _4956 PP_4957: PP_4957 - conserved protein of unknown function, at 5,648,217 to 5,648,513 _4957 PP_4958: PP_4958 - putative metal-dependent hydrolase, at 5,648,526 to 5,649,065 _4958 PP_4959: PP_4959 - diguanylate cyclase, at 5,649,066 to 5,651,192 _4959 Position (kb) 5648 5649 5650Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5647.631 kb on + strandat 5647.663 kb on + strandat 5647.663 kb on + strandat 5647.663 kb on + strandat 5647.663 kb on + strandat 5647.663 kb on + strandat 5647.664 kb on - strandat 5647.673 kb on + strandat 5647.796 kb on - strand, within PP_4956at 5647.796 kb on - strand, within PP_4956at 5647.796 kb on - strand, within PP_4956at 5647.796 kb on - strand, within PP_4956at 5647.811 kb on + strand, within PP_4956at 5647.811 kb on + strand, within PP_4956at 5647.811 kb on + strand, within PP_4956at 5647.811 kb on + strand, within PP_4956at 5647.812 kb on - strand, within PP_4956at 5647.812 kb on - strand, within PP_4956at 5647.850 kb on - strand, within PP_4956at 5647.884 kb on + strand, within PP_4956at 5647.927 kb on + strand, within PP_4956at 5647.928 kb on - strand, within PP_4956at 5648.080 kb on + strand, within PP_4956at 5648.080 kb on + strand, within PP_4956at 5648.081 kb on - strand, within PP_4956at 5648.103 kb on - strand, within PP_4956at 5648.103 kb on - strand, within PP_4956at 5648.113 kb on + strand, within PP_4956at 5648.114 kb on - strand, within PP_4956at 5648.378 kb on + strand, within PP_4957at 5648.379 kb on - strand, within PP_4957at 5648.470 kb on + strand, within PP_4957at 5648.471 kb on - strand, within PP_4957at 5648.527 kb on + strandat 5648.528 kb on - strandat 5648.551 kb on + strandat 5648.551 kb on + strandat 5648.552 kb on - strandat 5648.560 kb on + strandat 5648.591 kb on - strand, within PP_4958at 5648.591 kb on - strand, within PP_4958at 5648.620 kb on + strand, within PP_4958at 5648.620 kb on + strand, within PP_4958at 5648.823 kb on + strand, within PP_4958at 5648.823 kb on + strandat 5648.823 kb on + strand, within PP_4958at 5648.823 kb on + strand, within PP_4958at 5648.854 kb on + strand, within PP_4958at 5648.855 kb on - strand, within PP_4958at 5648.855 kb on - strand, within PP_4958at 5648.855 kb on - strand, within PP_4958at 5648.855 kb on - strand, within PP_4958at 5648.878 kb on + strand, within PP_4958at 5648.878 kb on + strand, within PP_4958at 5648.878 kb on + strand, within PP_4958at 5648.879 kb on - strand, within PP_4958at 5648.879 kb on - strand, within PP_4958at 5648.884 kb on + strand, within PP_4958at 5648.884 kb on + strand, within PP_4958at 5648.884 kb on + strand, within PP_4958at 5648.885 kb on - strand, within PP_4958at 5648.885 kb on - strand, within PP_4958at 5648.885 kb on - strand, within PP_4958at 5648.939 kb on - strand, within PP_4958at 5649.010 kb on + strand, within PP_4958at 5649.010 kb on + strand, within PP_4958at 5649.010 kb on + strand, within PP_4958at 5649.010 kb on + strand, within PP_4958at 5649.010 kb on + strand, within PP_4958at 5649.011 kb on - strand, within PP_4958at 5649.011 kb on - strand, within PP_4958at 5649.011 kb on - strand, within PP_4958at 5649.015 kb on + strandat 5649.015 kb on + strandat 5649.015 kb on + strandat 5649.015 kb on + strandat 5649.015 kb on + strandat 5649.015 kb on + strandat 5649.016 kb on - strandat 5649.016 kb on - strandat 5649.016 kb on - strandat 5649.016 kb on - strandat 5649.016 kb on - strandat 5649.016 kb on - strandat 5649.019 kb on - strandat 5649.019 kb on - strandat 5649.019 kb on - strandat 5649.034 kb on + strandat 5649.059 kb on + strandat 5649.127 kb on + strandat 5649.151 kb on + strandat 5649.151 kb on + strandat 5649.152 kb on - strandat 5649.222 kb on - strandat 5649.222 kb on - strandat 5649.222 kb on - strandat 5649.222 kb on - strandat 5649.414 kb on + strand, within PP_4959at 5649.415 kb on - strand, within PP_4959at 5649.415 kb on - strand, within PP_4959at 5649.415 kb on - strand, within PP_4959at 5649.415 kb on - strand, within PP_4959at 5649.415 kb on - strand, within PP_4959at 5649.441 kb on - strand, within PP_4959at 5649.441 kb on - strand, within PP_4959at 5649.441 kb on - strand, within PP_4959at 5649.441 kb on - strand, within PP_4959at 5649.442 kb on + strand, within PP_4959at 5649.442 kb on + strand, within PP_4959at 5649.443 kb on - strand, within PP_4959at 5649.443 kb on - strand, within PP_4959at 5649.443 kb on - strand, within PP_4959at 5649.443 kb on - strand, within PP_4959at 5649.443 kb on - strand, within PP_4959at 5649.443 kb on - strand, within PP_4959at 5649.443 kb on - strand, within PP_4959at 5649.443 kb on - strand, within PP_4959at 5649.598 kb on + strand, within PP_4959at 5649.599 kb on - strand, within PP_4959at 5649.784 kb on + strand, within PP_4959at 5649.785 kb on - strand, within PP_4959at 5649.794 kb on + strand, within PP_4959at 5649.794 kb on + strand, within PP_4959at 5649.794 kb on + strand, within PP_4959at 5649.877 kb on + strand, within PP_4959at 5649.916 kb on + strand, within PP_4959at 5649.917 kb on - strand, within PP_4959at 5649.974 kb on - strand, within PP_4959at 5650.020 kb on + strand, within PP_4959at 5650.021 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Temperature shift 10_to_30
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5,647,631 + -0.4
5,647,663 + +0.1
5,647,663 + +0.9
5,647,663 + -1.3
5,647,663 + +0.6
5,647,663 + +0.8
5,647,664 - -0.4
5,647,673 + +2.4
5,647,796 - PP_4956 0.12 -0.8
5,647,796 - PP_4956 0.12 +0.9
5,647,796 - PP_4956 0.12 +0.5
5,647,796 - PP_4956 0.12 -0.6
5,647,811 + PP_4956 0.15 +1.0
5,647,811 + PP_4956 0.15 -0.5
5,647,811 + PP_4956 0.15 +0.6
5,647,811 + PP_4956 0.15 -1.7
5,647,812 - PP_4956 0.16 -0.3
5,647,812 - PP_4956 0.16 +0.5
5,647,850 - PP_4956 0.24 +1.3
5,647,884 + PP_4956 0.32 +0.3
5,647,927 + PP_4956 0.41 +0.9
5,647,928 - PP_4956 0.41 -2.1
5,648,080 + PP_4956 0.75 -0.3
5,648,080 + PP_4956 0.75 -0.2
5,648,081 - PP_4956 0.75 -0.1
5,648,103 - PP_4956 0.80 +0.7
5,648,103 - PP_4956 0.80 -0.3
5,648,113 + PP_4956 0.82 +0.1
5,648,114 - PP_4956 0.82 -2.1
5,648,378 + PP_4957 0.54 +0.1
5,648,379 - PP_4957 0.55 -0.9
5,648,470 + PP_4957 0.85 +0.6
5,648,471 - PP_4957 0.86 +0.9
5,648,527 + -1.2
5,648,528 - +0.0
5,648,551 + +0.2
5,648,551 + -0.6
5,648,552 - +0.6
5,648,560 + -0.6
5,648,591 - PP_4958 0.12 +0.0
5,648,591 - PP_4958 0.12 -0.1
5,648,620 + PP_4958 0.17 +0.2
5,648,620 + PP_4958 0.17 -0.5
5,648,823 + PP_4958 0.55 -2.1
5,648,823 + +0.6
5,648,823 + PP_4958 0.55 -0.1
5,648,823 + PP_4958 0.55 +0.0
5,648,854 + PP_4958 0.61 +0.9
5,648,855 - PP_4958 0.61 -0.8
5,648,855 - PP_4958 0.61 -0.1
5,648,855 - PP_4958 0.61 +0.8
5,648,855 - PP_4958 0.61 -0.4
5,648,878 + PP_4958 0.65 +0.6
5,648,878 + PP_4958 0.65 -0.3
5,648,878 + PP_4958 0.65 +0.7
5,648,879 - PP_4958 0.65 -3.1
5,648,879 - PP_4958 0.65 -1.2
5,648,884 + PP_4958 0.66 +1.5
5,648,884 + PP_4958 0.66 -0.3
5,648,884 + PP_4958 0.66 +0.6
5,648,885 - PP_4958 0.66 +0.3
5,648,885 - PP_4958 0.66 +0.3
5,648,885 - PP_4958 0.66 +0.2
5,648,939 - PP_4958 0.76 -0.7
5,649,010 + PP_4958 0.90 +1.0
5,649,010 + PP_4958 0.90 -0.1
5,649,010 + PP_4958 0.90 -0.4
5,649,010 + PP_4958 0.90 +1.4
5,649,010 + PP_4958 0.90 +1.7
5,649,011 - PP_4958 0.90 -0.5
5,649,011 - PP_4958 0.90 +0.8
5,649,011 - PP_4958 0.90 -0.5
5,649,015 + +0.6
5,649,015 + +0.5
5,649,015 + +1.2
5,649,015 + -0.7
5,649,015 + -0.1
5,649,015 + -0.0
5,649,016 - -2.2
5,649,016 - +1.7
5,649,016 - +1.1
5,649,016 - +0.2
5,649,016 - -0.1
5,649,016 - +0.8
5,649,019 - +0.7
5,649,019 - -0.6
5,649,019 - -0.4
5,649,034 + -0.4
5,649,059 + +1.9
5,649,127 + +0.6
5,649,151 + +1.0
5,649,151 + +2.0
5,649,152 - +1.3
5,649,222 - +1.7
5,649,222 - +1.2
5,649,222 - +1.5
5,649,222 - +1.5
5,649,414 + PP_4959 0.16 +1.2
5,649,415 - PP_4959 0.16 +1.2
5,649,415 - PP_4959 0.16 +1.6
5,649,415 - PP_4959 0.16 +0.9
5,649,415 - PP_4959 0.16 -0.1
5,649,415 - PP_4959 0.16 +1.9
5,649,441 - PP_4959 0.18 +1.2
5,649,441 - PP_4959 0.18 +1.2
5,649,441 - PP_4959 0.18 +1.3
5,649,441 - PP_4959 0.18 +1.9
5,649,442 + PP_4959 0.18 +1.9
5,649,442 + PP_4959 0.18 +1.7
5,649,443 - PP_4959 0.18 +2.4
5,649,443 - PP_4959 0.18 +0.9
5,649,443 - PP_4959 0.18 +1.8
5,649,443 - PP_4959 0.18 +1.4
5,649,443 - PP_4959 0.18 +1.9
5,649,443 - PP_4959 0.18 +1.2
5,649,443 - PP_4959 0.18 +0.6
5,649,443 - PP_4959 0.18 +0.7
5,649,598 + PP_4959 0.25 -0.1
5,649,599 - PP_4959 0.25 +1.1
5,649,784 + PP_4959 0.34 -0.1
5,649,785 - PP_4959 0.34 +0.1
5,649,794 + PP_4959 0.34 +0.6
5,649,794 + PP_4959 0.34 -0.0
5,649,794 + PP_4959 0.34 -0.6
5,649,877 + PP_4959 0.38 +0.7
5,649,916 + PP_4959 0.40 +1.3
5,649,917 - PP_4959 0.40 +1.6
5,649,974 - PP_4959 0.43 +2.3
5,650,020 + PP_4959 0.45 +1.3
5,650,021 - +1.8

Or see this region's nucleotide sequence