Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01905 and PS417_01910 are separated by 249 nucleotides PS417_01910 and PS417_01915 are separated by 148 nucleotides PS417_01915 and PS417_01920 are separated by 36 nucleotides PS417_01920 and PS417_01925 are separated by 257 nucleotides
PS417_01905: PS417_01905 - poly(R)-hydroxyalkanoic acid synthase, at 421,219 to 422,898
_01905
PS417_01910: PS417_01910 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 423,148 to 423,525
_01910
PS417_01915: PS417_01915 - ATP-dependent protease ATP-binding subunit HslU, at 423,674 to 425,011
_01915
PS417_01920: PS417_01920 - ATP-dependent protease subunit HslV, at 425,048 to 425,578
_01920
PS417_01925: PS417_01925 - cell division protein, at 425,836 to 426,537
_01925
Position (kb) 423
424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 422.892 kb on + strand at 422.893 kb on - strand at 422.901 kb on - strand at 423.599 kb on + strand at 423.676 kb on - strand at 424.743 kb on + strand, within PS417_01915 at 425.012 kb on - strand at 425.012 kb on - strand at 425.464 kb on - strand, within PS417_01920 at 425.684 kb on + strand at 425.684 kb on + strand at 425.684 kb on + strand at 425.685 kb on - strand at 425.764 kb on + strand at 425.765 kb on - strand at 425.781 kb on - strand at 425.781 kb on - strand at 425.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 422,892 + +0.1 422,893 - +0.5 422,901 - -0.1 423,599 + -0.6 423,676 - +0.2 424,743 + PS417_01915 0.80 -3.0 425,012 - +0.4 425,012 - -1.0 425,464 - PS417_01920 0.78 -0.2 425,684 + +0.5 425,684 + -0.0 425,684 + +1.7 425,685 - +0.2 425,764 + +0.4 425,765 - -0.6 425,781 - +0.1 425,781 - -1.4 425,787 + +0.0
Or see this region's nucleotide sequence