Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04730 and PS417_04735 are separated by 124 nucleotides PS417_04735 and PS417_04740 are separated by 180 nucleotides
PS417_04730: PS417_04730 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 1,048,960 to 1,049,934
_04730
PS417_04735: PS417_04735 - LysR family transcriptional regulator, at 1,050,059 to 1,051,027
_04735
PS417_04740: PS417_04740 - RND transporter, at 1,051,208 to 1,052,719
_04740
Position (kb) 1050
1051
1052 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 1049.147 kb on + strand, within PS417_04730 at 1049.147 kb on + strand, within PS417_04730 at 1049.147 kb on + strand, within PS417_04730 at 1049.147 kb on + strand, within PS417_04730 at 1049.148 kb on - strand, within PS417_04730 at 1049.696 kb on + strand, within PS417_04730 at 1049.696 kb on + strand, within PS417_04730 at 1049.696 kb on + strand, within PS417_04730 at 1049.697 kb on - strand, within PS417_04730 at 1049.697 kb on - strand, within PS417_04730 at 1049.752 kb on + strand, within PS417_04730 at 1049.753 kb on - strand, within PS417_04730 at 1050.103 kb on - strand at 1050.160 kb on - strand, within PS417_04735 at 1050.207 kb on + strand, within PS417_04735 at 1050.207 kb on + strand at 1050.208 kb on - strand, within PS417_04735 at 1050.240 kb on + strand, within PS417_04735 at 1050.240 kb on + strand, within PS417_04735 at 1050.241 kb on - strand, within PS417_04735 at 1050.241 kb on - strand, within PS417_04735 at 1050.513 kb on + strand, within PS417_04735 at 1050.540 kb on + strand, within PS417_04735 at 1050.540 kb on + strand, within PS417_04735 at 1050.544 kb on + strand, within PS417_04735 at 1050.545 kb on - strand, within PS417_04735 at 1050.545 kb on - strand, within PS417_04735 at 1050.545 kb on - strand, within PS417_04735 at 1050.834 kb on + strand, within PS417_04735 at 1050.835 kb on - strand, within PS417_04735 at 1051.010 kb on - strand at 1051.088 kb on - strand at 1051.139 kb on + strand at 1051.139 kb on + strand at 1051.140 kb on - strand at 1051.176 kb on + strand at 1051.586 kb on + strand, within PS417_04740 at 1051.772 kb on + strand, within PS417_04740 at 1051.773 kb on - strand, within PS417_04740 at 1051.773 kb on - strand, within PS417_04740
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,049,147 + PS417_04730 0.19 +0.3 1,049,147 + PS417_04730 0.19 +0.5 1,049,147 + PS417_04730 0.19 -0.7 1,049,147 + PS417_04730 0.19 +0.6 1,049,148 - PS417_04730 0.19 +1.1 1,049,696 + PS417_04730 0.75 -2.0 1,049,696 + PS417_04730 0.75 -0.4 1,049,696 + PS417_04730 0.75 -2.1 1,049,697 - PS417_04730 0.76 -0.5 1,049,697 - PS417_04730 0.76 +0.8 1,049,752 + PS417_04730 0.81 -0.7 1,049,753 - PS417_04730 0.81 -0.4 1,050,103 - +1.3 1,050,160 - PS417_04735 0.10 +1.2 1,050,207 + PS417_04735 0.15 -1.1 1,050,207 + -0.4 1,050,208 - PS417_04735 0.15 -1.4 1,050,240 + PS417_04735 0.19 +0.6 1,050,240 + PS417_04735 0.19 +1.0 1,050,241 - PS417_04735 0.19 -0.8 1,050,241 - PS417_04735 0.19 +0.4 1,050,513 + PS417_04735 0.47 +1.6 1,050,540 + PS417_04735 0.50 +1.0 1,050,540 + PS417_04735 0.50 +2.6 1,050,544 + PS417_04735 0.50 +1.0 1,050,545 - PS417_04735 0.50 +4.4 1,050,545 - PS417_04735 0.50 -1.6 1,050,545 - PS417_04735 0.50 +1.4 1,050,834 + PS417_04735 0.80 -1.1 1,050,835 - PS417_04735 0.80 +1.0 1,051,010 - -0.1 1,051,088 - -0.2 1,051,139 + -6.6 1,051,139 + +1.7 1,051,140 - -2.9 1,051,176 + +0.7 1,051,586 + PS417_04740 0.25 +0.1 1,051,772 + PS417_04740 0.37 -0.5 1,051,773 - PS417_04740 0.37 -0.7 1,051,773 - PS417_04740 0.37 -3.2
Or see this region's nucleotide sequence