Strain Fitness in Pseudomonas simiae WCS417 around PS417_03545

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03535 and PS417_03540 are separated by 2 nucleotidesPS417_03540 and PS417_03545 overlap by 8 nucleotidesPS417_03545 and PS417_03550 are separated by 6 nucleotidesPS417_03550 and PS417_03555 are separated by 473 nucleotides PS417_03535: PS417_03535 - type III secretion protein, at 807,504 to 808,115 _03535 PS417_03540: PS417_03540 - type III secretion protein, at 808,118 to 808,675 _03540 PS417_03545: PS417_03545 - type III secretion protein, at 808,668 to 809,489 _03545 PS417_03550: PS417_03550 - hypothetical protein, at 809,496 to 809,858 _03550 PS417_03555: PS417_03555 - ATPase AAA, at 810,332 to 811,258 _03555 Position (kb) 808 809 810Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 807.734 kb on + strand, within PS417_03535at 807.735 kb on - strand, within PS417_03535at 807.779 kb on + strand, within PS417_03535at 807.779 kb on + strand, within PS417_03535at 807.780 kb on - strand, within PS417_03535at 807.782 kb on + strand, within PS417_03535at 807.810 kb on + strand, within PS417_03535at 807.811 kb on - strand, within PS417_03535at 807.822 kb on - strand, within PS417_03535at 807.921 kb on + strand, within PS417_03535at 807.975 kb on + strand, within PS417_03535at 807.975 kb on + strandat 807.975 kb on + strand, within PS417_03535at 807.976 kb on - strand, within PS417_03535at 807.978 kb on + strand, within PS417_03535at 807.979 kb on - strand, within PS417_03535at 808.031 kb on - strand, within PS417_03535at 808.119 kb on + strandat 808.174 kb on + strand, within PS417_03540at 808.248 kb on - strand, within PS417_03540at 808.256 kb on + strand, within PS417_03540at 808.256 kb on + strand, within PS417_03540at 808.384 kb on + strand, within PS417_03540at 808.385 kb on - strand, within PS417_03540at 808.385 kb on - strand, within PS417_03540at 808.499 kb on + strand, within PS417_03540at 808.500 kb on - strand, within PS417_03540at 808.524 kb on - strand, within PS417_03540at 808.583 kb on + strand, within PS417_03540at 808.583 kb on + strand, within PS417_03540at 808.584 kb on - strand, within PS417_03540at 808.584 kb on - strand, within PS417_03540at 808.584 kb on - strand, within PS417_03540at 808.585 kb on + strand, within PS417_03540at 808.586 kb on - strand, within PS417_03540at 808.586 kb on - strand, within PS417_03540at 808.586 kb on - strand, within PS417_03540at 808.596 kb on + strand, within PS417_03540at 808.596 kb on + strand, within PS417_03540at 808.596 kb on + strand, within PS417_03540at 808.629 kb on + strandat 808.629 kb on + strandat 808.629 kb on + strandat 808.630 kb on - strandat 808.630 kb on - strandat 808.631 kb on + strandat 808.632 kb on - strandat 808.669 kb on + strandat 808.669 kb on + strandat 808.772 kb on + strand, within PS417_03545at 808.773 kb on - strand, within PS417_03545at 808.773 kb on - strand, within PS417_03545at 808.773 kb on - strand, within PS417_03545at 808.870 kb on + strand, within PS417_03545at 808.894 kb on + strand, within PS417_03545at 808.895 kb on - strand, within PS417_03545at 809.018 kb on + strandat 809.164 kb on + strand, within PS417_03545at 809.164 kb on + strand, within PS417_03545at 809.164 kb on + strand, within PS417_03545at 809.164 kb on + strand, within PS417_03545at 809.164 kb on + strand, within PS417_03545at 809.165 kb on - strand, within PS417_03545at 809.168 kb on + strand, within PS417_03545at 809.168 kb on + strand, within PS417_03545at 809.168 kb on + strand, within PS417_03545at 809.168 kb on + strand, within PS417_03545at 809.168 kb on + strand, within PS417_03545at 809.169 kb on - strand, within PS417_03545at 809.170 kb on + strand, within PS417_03545at 809.171 kb on - strand, within PS417_03545at 809.234 kb on + strand, within PS417_03545at 809.339 kb on + strand, within PS417_03545at 809.374 kb on - strand, within PS417_03545at 809.376 kb on + strand, within PS417_03545at 809.401 kb on - strand, within PS417_03545at 809.401 kb on - strand, within PS417_03545at 809.429 kb on + strandat 809.457 kb on + strandat 809.457 kb on + strandat 809.457 kb on + strandat 809.458 kb on - strandat 809.458 kb on - strandat 809.458 kb on - strandat 809.655 kb on - strand, within PS417_03550at 809.673 kb on + strand, within PS417_03550at 809.717 kb on + strand, within PS417_03550at 809.718 kb on - strand, within PS417_03550at 809.828 kb on + strandat 809.829 kb on - strandat 810.029 kb on + strandat 810.168 kb on - strandat 810.168 kb on - strandat 810.187 kb on - strandat 810.192 kb on + strandat 810.294 kb on + strandat 810.294 kb on + strandat 810.295 kb on - strandat 810.295 kb on - strandat 810.311 kb on - strandat 810.424 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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807,734 + PS417_03535 0.38 +0.6
807,735 - PS417_03535 0.38 -0.9
807,779 + PS417_03535 0.45 +1.6
807,779 + PS417_03535 0.45 -0.2
807,780 - PS417_03535 0.45 -2.8
807,782 + PS417_03535 0.45 -1.1
807,810 + PS417_03535 0.50 +1.9
807,811 - PS417_03535 0.50 -0.3
807,822 - PS417_03535 0.52 -0.5
807,921 + PS417_03535 0.68 -1.2
807,975 + PS417_03535 0.77 +0.5
807,975 + -0.3
807,975 + PS417_03535 0.77 +0.1
807,976 - PS417_03535 0.77 +0.4
807,978 + PS417_03535 0.77 +0.4
807,979 - PS417_03535 0.78 +1.1
808,031 - PS417_03535 0.86 -0.1
808,119 + +0.7
808,174 + PS417_03540 0.10 +0.1
808,248 - PS417_03540 0.23 +1.5
808,256 + PS417_03540 0.25 -0.1
808,256 + PS417_03540 0.25 -0.1
808,384 + PS417_03540 0.48 -1.6
808,385 - PS417_03540 0.48 -2.1
808,385 - PS417_03540 0.48 -1.6
808,499 + PS417_03540 0.68 -1.8
808,500 - PS417_03540 0.68 -0.8
808,524 - PS417_03540 0.73 +0.0
808,583 + PS417_03540 0.83 +0.1
808,583 + PS417_03540 0.83 +0.2
808,584 - PS417_03540 0.84 +1.1
808,584 - PS417_03540 0.84 -0.8
808,584 - PS417_03540 0.84 -1.1
808,585 + PS417_03540 0.84 -1.3
808,586 - PS417_03540 0.84 -3.1
808,586 - PS417_03540 0.84 +0.9
808,586 - PS417_03540 0.84 -1.0
808,596 + PS417_03540 0.86 +0.6
808,596 + PS417_03540 0.86 -0.2
808,596 + PS417_03540 0.86 +0.7
808,629 + -0.9
808,629 + -1.3
808,629 + +0.9
808,630 - +2.2
808,630 - -0.5
808,631 + +1.5
808,632 - -1.6
808,669 + -1.2
808,669 + +0.3
808,772 + PS417_03545 0.13 +0.4
808,773 - PS417_03545 0.13 +2.3
808,773 - PS417_03545 0.13 +1.0
808,773 - PS417_03545 0.13 +0.6
808,870 + PS417_03545 0.25 +1.2
808,894 + PS417_03545 0.27 -0.0
808,895 - PS417_03545 0.28 +0.1
809,018 + -0.1
809,164 + PS417_03545 0.60 +0.5
809,164 + PS417_03545 0.60 +1.0
809,164 + PS417_03545 0.60 -3.1
809,164 + PS417_03545 0.60 +2.8
809,164 + PS417_03545 0.60 +1.3
809,165 - PS417_03545 0.60 -1.4
809,168 + PS417_03545 0.61 +0.7
809,168 + PS417_03545 0.61 +0.0
809,168 + PS417_03545 0.61 +0.6
809,168 + PS417_03545 0.61 -0.6
809,168 + PS417_03545 0.61 +0.2
809,169 - PS417_03545 0.61 +0.5
809,170 + PS417_03545 0.61 +0.2
809,171 - PS417_03545 0.61 +1.0
809,234 + PS417_03545 0.69 +1.0
809,339 + PS417_03545 0.82 +0.6
809,374 - PS417_03545 0.86 -1.1
809,376 + PS417_03545 0.86 -2.3
809,401 - PS417_03545 0.89 +1.1
809,401 - PS417_03545 0.89 +1.5
809,429 + -1.3
809,457 + +0.3
809,457 + +0.6
809,457 + -0.7
809,458 - -0.3
809,458 - +1.1
809,458 - -2.4
809,655 - PS417_03550 0.44 -0.9
809,673 + PS417_03550 0.49 -0.2
809,717 + PS417_03550 0.61 +2.7
809,718 - PS417_03550 0.61 -0.7
809,828 + +1.2
809,829 - -2.7
810,029 + -1.5
810,168 - +0.1
810,168 - +0.4
810,187 - -0.9
810,192 + +0.2
810,294 + -0.6
810,294 + +0.1
810,295 - -0.8
810,295 - -1.4
810,311 - -1.3
810,424 + -0.1

Or see this region's nucleotide sequence