Strain Fitness in Pseudomonas simiae WCS417 around PS417_27065

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27055 and PS417_27060 are separated by 2 nucleotidesPS417_27060 and PS417_27065 are separated by 131 nucleotidesPS417_27065 and PS417_27070 are separated by 20 nucleotides PS417_27055: PS417_27055 - hypothetical protein, at 5,841,690 to 5,842,184 _27055 PS417_27060: PS417_27060 - 2OG-Fe(II) oxygenase, at 5,842,187 to 5,842,819 _27060 PS417_27065: PS417_27065 - hypothetical protein, at 5,842,951 to 5,843,703 _27065 PS417_27070: PS417_27070 - alpha/beta hydrolase, at 5,843,724 to 5,844,650 _27070 Position (kb) 5842 5843 5844Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5842.053 kb on + strand, within PS417_27055at 5842.321 kb on - strand, within PS417_27060at 5842.321 kb on - strand, within PS417_27060at 5842.341 kb on + strand, within PS417_27060at 5842.341 kb on + strand, within PS417_27060at 5842.341 kb on + strand, within PS417_27060at 5842.341 kb on + strand, within PS417_27060at 5842.342 kb on - strand, within PS417_27060at 5842.342 kb on - strand, within PS417_27060at 5842.450 kb on - strand, within PS417_27060at 5842.552 kb on + strand, within PS417_27060at 5842.553 kb on - strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.554 kb on + strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strandat 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.555 kb on - strand, within PS417_27060at 5842.612 kb on + strand, within PS417_27060at 5842.774 kb on + strandat 5842.774 kb on + strandat 5842.774 kb on + strandat 5842.774 kb on + strandat 5842.775 kb on - strandat 5842.775 kb on - strandat 5842.775 kb on - strandat 5842.802 kb on + strandat 5842.803 kb on - strandat 5842.819 kb on + strandat 5842.819 kb on + strandat 5842.820 kb on - strandat 5842.822 kb on + strandat 5842.823 kb on - strandat 5842.823 kb on - strandat 5842.823 kb on - strandat 5842.828 kb on + strandat 5842.866 kb on + strandat 5842.874 kb on - strandat 5842.874 kb on - strandat 5842.927 kb on - strandat 5843.023 kb on + strandat 5843.024 kb on - strandat 5843.024 kb on - strandat 5843.120 kb on - strand, within PS417_27065at 5843.120 kb on - strand, within PS417_27065at 5843.554 kb on + strand, within PS417_27065at 5843.555 kb on - strand, within PS417_27065at 5843.555 kb on - strand, within PS417_27065at 5843.630 kb on - strandat 5843.632 kb on + strandat 5843.633 kb on - strandat 5843.633 kb on - strandat 5843.633 kb on - strandat 5843.718 kb on + strandat 5843.719 kb on - strandat 5843.725 kb on + strandat 5843.725 kb on + strandat 5843.725 kb on + strandat 5843.726 kb on - strandat 5843.726 kb on - strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.759 kb on - strandat 5843.759 kb on - strandat 5844.091 kb on + strand, within PS417_27070at 5844.091 kb on + strand, within PS417_27070at 5844.092 kb on - strand, within PS417_27070at 5844.094 kb on + strand, within PS417_27070at 5844.094 kb on + strand, within PS417_27070at 5844.094 kb on + strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.298 kb on + strand, within PS417_27070at 5844.431 kb on - strand, within PS417_27070at 5844.650 kb on + strandat 5844.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,842,053 + PS417_27055 0.73 -0.0
5,842,321 - PS417_27060 0.21 -0.8
5,842,321 - PS417_27060 0.21 -1.0
5,842,341 + PS417_27060 0.24 -1.7
5,842,341 + PS417_27060 0.24 -2.2
5,842,341 + PS417_27060 0.24 -0.2
5,842,341 + PS417_27060 0.24 -0.9
5,842,342 - PS417_27060 0.24 +0.4
5,842,342 - PS417_27060 0.24 -2.9
5,842,450 - PS417_27060 0.42 -0.2
5,842,552 + PS417_27060 0.58 -0.4
5,842,553 - PS417_27060 0.58 +2.5
5,842,554 + PS417_27060 0.58 -0.2
5,842,554 + PS417_27060 0.58 -1.0
5,842,554 + PS417_27060 0.58 +0.9
5,842,554 + PS417_27060 0.58 +0.2
5,842,554 + PS417_27060 0.58 -1.3
5,842,554 + PS417_27060 0.58 -0.9
5,842,554 + PS417_27060 0.58 +1.0
5,842,554 + PS417_27060 0.58 -0.5
5,842,554 + PS417_27060 0.58 -1.4
5,842,554 + PS417_27060 0.58 -1.8
5,842,554 + PS417_27060 0.58 +0.4
5,842,554 + PS417_27060 0.58 +0.3
5,842,554 + PS417_27060 0.58 -0.3
5,842,554 + PS417_27060 0.58 +0.4
5,842,555 - PS417_27060 0.58 +1.3
5,842,555 - PS417_27060 0.58 +1.5
5,842,555 - PS417_27060 0.58 -0.1
5,842,555 - PS417_27060 0.58 -2.8
5,842,555 - PS417_27060 0.58 -0.5
5,842,555 - -0.1
5,842,555 - PS417_27060 0.58 -0.4
5,842,555 - PS417_27060 0.58 -0.3
5,842,555 - PS417_27060 0.58 +0.3
5,842,555 - PS417_27060 0.58 +0.1
5,842,555 - PS417_27060 0.58 +0.3
5,842,612 + PS417_27060 0.67 +1.5
5,842,774 + +1.1
5,842,774 + -0.0
5,842,774 + -3.1
5,842,774 + -1.5
5,842,775 - +0.4
5,842,775 - -0.2
5,842,775 - +0.1
5,842,802 + -1.2
5,842,803 - -0.1
5,842,819 + -0.6
5,842,819 + -2.5
5,842,820 - +2.2
5,842,822 + -0.3
5,842,823 - +3.0
5,842,823 - +0.4
5,842,823 - +0.6
5,842,828 + +0.8
5,842,866 + -0.7
5,842,874 - -0.1
5,842,874 - -0.4
5,842,927 - -0.8
5,843,023 + +0.4
5,843,024 - +1.7
5,843,024 - +2.6
5,843,120 - PS417_27065 0.22 +0.9
5,843,120 - PS417_27065 0.22 +0.8
5,843,554 + PS417_27065 0.80 +0.9
5,843,555 - PS417_27065 0.80 +1.8
5,843,555 - PS417_27065 0.80 +0.3
5,843,630 - -1.0
5,843,632 + -1.5
5,843,633 - -0.2
5,843,633 - -0.0
5,843,633 - +1.1
5,843,718 + -2.2
5,843,719 - -0.6
5,843,725 + -1.4
5,843,725 + -1.6
5,843,725 + -0.1
5,843,726 - +1.0
5,843,726 - +0.5
5,843,753 + -3.7
5,843,753 + +1.0
5,843,753 + +0.6
5,843,753 + +1.3
5,843,753 + +1.1
5,843,754 - +1.3
5,843,754 - -2.3
5,843,754 - -0.9
5,843,754 - -0.1
5,843,754 - -1.4
5,843,754 - +0.4
5,843,759 - -0.6
5,843,759 - -1.3
5,844,091 + PS417_27070 0.40 -0.2
5,844,091 + PS417_27070 0.40 +0.5
5,844,092 - PS417_27070 0.40 +1.0
5,844,094 + PS417_27070 0.40 +1.5
5,844,094 + PS417_27070 0.40 -0.3
5,844,094 + PS417_27070 0.40 -3.7
5,844,095 - PS417_27070 0.40 -1.6
5,844,095 - PS417_27070 0.40 -0.4
5,844,095 - PS417_27070 0.40 +0.5
5,844,095 - PS417_27070 0.40 +0.7
5,844,095 - PS417_27070 0.40 +0.8
5,844,298 + PS417_27070 0.62 -0.7
5,844,431 - PS417_27070 0.76 -0.7
5,844,650 + -1.0
5,844,651 - -0.8

Or see this region's nucleotide sequence