Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02575 and PS417_02580 are separated by 18 nucleotides PS417_02580 and PS417_02585 are separated by 109 nucleotides PS417_02585 and PS417_02590 are separated by 96 nucleotides
PS417_02575: PS417_02575 - membrane protein, at 586,359 to 587,252
_02575
PS417_02580: PS417_02580 - 50S ribosomal protein L9, at 587,271 to 587,717
_02580
PS417_02585: PS417_02585 - DNA helicase, at 587,827 to 589,224
_02585
PS417_02590: PS417_02590 - hypothetical protein, at 589,321 to 591,624
_02590
Position (kb) 587
588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 586.884 kb on + strand, within PS417_02575 at 587.121 kb on + strand, within PS417_02575 at 587.121 kb on + strand, within PS417_02575 at 587.121 kb on + strand, within PS417_02575 at 587.121 kb on + strand, within PS417_02575 at 589.201 kb on + strand at 589.201 kb on + strand at 589.276 kb on + strand at 589.276 kb on + strand at 589.277 kb on - strand at 589.277 kb on - strand at 589.278 kb on + strand at 589.278 kb on + strand at 589.340 kb on + strand at 589.357 kb on + strand at 589.357 kb on + strand at 589.357 kb on + strand at 589.358 kb on - strand at 589.465 kb on + strand at 589.465 kb on + strand at 589.682 kb on - strand, within PS417_02590 at 589.682 kb on - strand, within PS417_02590 at 589.733 kb on - strand at 589.775 kb on + strand, within PS417_02590 at 589.823 kb on - strand, within PS417_02590 at 589.990 kb on - strand, within PS417_02590
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 586,884 + PS417_02575 0.59 -0.4 587,121 + PS417_02575 0.85 +1.5 587,121 + PS417_02575 0.85 -1.1 587,121 + PS417_02575 0.85 +3.8 587,121 + PS417_02575 0.85 -2.4 589,201 + -1.9 589,201 + +0.8 589,276 + +0.9 589,276 + +1.1 589,277 - +2.1 589,277 - -0.7 589,278 + -0.4 589,278 + -0.3 589,340 + -2.2 589,357 + +0.2 589,357 + -0.4 589,357 + -0.6 589,358 - -2.3 589,465 + -0.0 589,465 + +0.0 589,682 - PS417_02590 0.16 -1.3 589,682 - PS417_02590 0.16 +0.1 589,733 - +0.8 589,775 + PS417_02590 0.20 -1.0 589,823 - PS417_02590 0.22 +0.3 589,990 - PS417_02590 0.29 +0.3
Or see this region's nucleotide sequence