Strain Fitness in Pseudomonas simiae WCS417 around PS417_24355

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24350 and PS417_24355 are separated by 319 nucleotidesPS417_24355 and PS417_24360 are separated by 157 nucleotides PS417_24350: PS417_24350 - cytochrome D ubiquinol oxidase subunit I, at 5,284,080 to 5,285,519 _24350 PS417_24355: PS417_24355 - MFS transporter, at 5,285,839 to 5,287,077 _24355 PS417_24360: PS417_24360 - aldehyde oxidase, at 5,287,235 to 5,289,418 _24360 Position (kb) 5285 5286 5287 5288Strain fitness (log2 ratio) -2 -1 0 1 2at 5285.222 kb on - strandat 5285.222 kb on - strand, within PS417_24350at 5285.291 kb on - strand, within PS417_24350at 5285.419 kb on + strandat 5285.420 kb on - strandat 5285.499 kb on + strandat 5285.519 kb on + strandat 5285.519 kb on + strandat 5285.541 kb on + strandat 5285.700 kb on - strandat 5285.780 kb on + strandat 5285.780 kb on + strandat 5285.781 kb on - strandat 5285.801 kb on - strandat 5285.959 kb on + strandat 5285.960 kb on - strandat 5286.358 kb on + strand, within PS417_24355at 5286.359 kb on - strand, within PS417_24355at 5286.379 kb on + strand, within PS417_24355at 5286.380 kb on - strand, within PS417_24355at 5287.075 kb on + strandat 5287.090 kb on - strandat 5287.090 kb on - strandat 5287.110 kb on + strandat 5287.110 kb on + strandat 5287.111 kb on - strandat 5287.111 kb on - strandat 5287.111 kb on - strandat 5287.293 kb on + strandat 5287.293 kb on + strandat 5287.462 kb on - strand, within PS417_24360at 5287.671 kb on + strand, within PS417_24360at 5287.672 kb on - strand, within PS417_24360at 5288.022 kb on + strand, within PS417_24360at 5288.023 kb on - strand, within PS417_24360

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,285,222 - +0.4
5,285,222 - PS417_24350 0.79 +0.6
5,285,291 - PS417_24350 0.84 +0.8
5,285,419 + +1.3
5,285,420 - +2.0
5,285,499 + +1.6
5,285,519 + +0.2
5,285,519 + -0.1
5,285,541 + -0.8
5,285,700 - +0.6
5,285,780 + +0.4
5,285,780 + -1.2
5,285,781 - -0.1
5,285,801 - -0.8
5,285,959 + -2.3
5,285,960 - -2.3
5,286,358 + PS417_24355 0.42 +0.0
5,286,359 - PS417_24355 0.42 -0.4
5,286,379 + PS417_24355 0.44 -2.7
5,286,380 - PS417_24355 0.44 -1.7
5,287,075 + +0.1
5,287,090 - -0.4
5,287,090 - -0.3
5,287,110 + -1.8
5,287,110 + -0.1
5,287,111 - +0.6
5,287,111 - -0.4
5,287,111 - +1.3
5,287,293 + +2.4
5,287,293 + +0.7
5,287,462 - PS417_24360 0.10 +0.7
5,287,671 + PS417_24360 0.20 +0.5
5,287,672 - PS417_24360 0.20 -2.5
5,288,022 + PS417_24360 0.36 +0.2
5,288,023 - PS417_24360 0.36 +0.0

Or see this region's nucleotide sequence