Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23925 and PS417_23930 are separated by 16 nucleotides PS417_23930 and PS417_23935 are separated by 57 nucleotides
PS417_23925: PS417_23925 - acetyl-CoA synthetase, at 5,178,186 to 5,180,123
_23925
PS417_23930: PS417_23930 - histidine kinase, at 5,180,140 to 5,181,009
_23930
PS417_23935: PS417_23935 - SAM-dependent methyltransferase, at 5,181,067 to 5,182,083
_23935
Position (kb) 5180
5181
5182 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5179.182 kb on + strand, within PS417_23925 at 5179.369 kb on - strand, within PS417_23925 at 5179.507 kb on + strand, within PS417_23925 at 5179.608 kb on + strand, within PS417_23925 at 5179.608 kb on + strand, within PS417_23925 at 5179.609 kb on - strand, within PS417_23925 at 5179.639 kb on - strand, within PS417_23925 at 5179.662 kb on + strand, within PS417_23925 at 5179.662 kb on + strand, within PS417_23925 at 5179.705 kb on - strand, within PS417_23925 at 5179.854 kb on + strand, within PS417_23925 at 5179.854 kb on + strand, within PS417_23925 at 5179.854 kb on + strand, within PS417_23925 at 5179.855 kb on - strand, within PS417_23925 at 5179.855 kb on - strand, within PS417_23925 at 5179.855 kb on - strand, within PS417_23925 at 5179.855 kb on - strand, within PS417_23925 at 5179.855 kb on - strand, within PS417_23925 at 5179.928 kb on + strand, within PS417_23925 at 5180.060 kb on + strand at 5180.638 kb on + strand, within PS417_23930 at 5180.639 kb on - strand, within PS417_23930 at 5180.641 kb on + strand, within PS417_23930 at 5180.642 kb on - strand, within PS417_23930 at 5180.642 kb on - strand, within PS417_23930 at 5180.642 kb on - strand, within PS417_23930 at 5180.642 kb on - strand, within PS417_23930 at 5180.642 kb on - strand, within PS417_23930 at 5180.741 kb on + strand at 5180.741 kb on + strand, within PS417_23930 at 5181.021 kb on + strand at 5181.021 kb on + strand at 5181.021 kb on + strand at 5181.021 kb on + strand at 5181.022 kb on - strand at 5181.022 kb on - strand at 5181.022 kb on - strand at 5181.028 kb on + strand at 5181.222 kb on - strand, within PS417_23935 at 5181.370 kb on + strand, within PS417_23935 at 5181.371 kb on - strand, within PS417_23935 at 5181.371 kb on - strand, within PS417_23935 at 5181.404 kb on + strand, within PS417_23935 at 5181.544 kb on + strand, within PS417_23935 at 5181.546 kb on + strand, within PS417_23935 at 5181.691 kb on + strand, within PS417_23935 at 5181.692 kb on - strand, within PS417_23935 at 5181.761 kb on - strand, within PS417_23935 at 5181.785 kb on - strand, within PS417_23935
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,179,182 + PS417_23925 0.51 -0.3 5,179,369 - PS417_23925 0.61 +0.2 5,179,507 + PS417_23925 0.68 -0.3 5,179,608 + PS417_23925 0.73 -0.3 5,179,608 + PS417_23925 0.73 -1.4 5,179,609 - PS417_23925 0.73 -0.3 5,179,639 - PS417_23925 0.75 -0.0 5,179,662 + PS417_23925 0.76 +1.0 5,179,662 + PS417_23925 0.76 -0.9 5,179,705 - PS417_23925 0.78 +0.3 5,179,854 + PS417_23925 0.86 -0.2 5,179,854 + PS417_23925 0.86 +1.0 5,179,854 + PS417_23925 0.86 -0.9 5,179,855 - PS417_23925 0.86 +0.4 5,179,855 - PS417_23925 0.86 -1.0 5,179,855 - PS417_23925 0.86 -0.5 5,179,855 - PS417_23925 0.86 +0.4 5,179,855 - PS417_23925 0.86 -0.8 5,179,928 + PS417_23925 0.90 +0.8 5,180,060 + -0.9 5,180,638 + PS417_23930 0.57 +0.2 5,180,639 - PS417_23930 0.57 -1.5 5,180,641 + PS417_23930 0.58 +0.1 5,180,642 - PS417_23930 0.58 -0.9 5,180,642 - PS417_23930 0.58 -0.0 5,180,642 - PS417_23930 0.58 -1.5 5,180,642 - PS417_23930 0.58 +0.1 5,180,642 - PS417_23930 0.58 -3.0 5,180,741 + -0.1 5,180,741 + PS417_23930 0.69 -0.6 5,181,021 + +0.6 5,181,021 + -0.1 5,181,021 + -0.6 5,181,021 + +0.1 5,181,022 - +1.0 5,181,022 - -0.8 5,181,022 - +1.1 5,181,028 + -1.6 5,181,222 - PS417_23935 0.15 -0.7 5,181,370 + PS417_23935 0.30 -0.9 5,181,371 - PS417_23935 0.30 -0.0 5,181,371 - PS417_23935 0.30 -1.2 5,181,404 + PS417_23935 0.33 -0.9 5,181,544 + PS417_23935 0.47 +0.3 5,181,546 + PS417_23935 0.47 -0.2 5,181,691 + PS417_23935 0.61 -0.4 5,181,692 - PS417_23935 0.61 -2.3 5,181,761 - PS417_23935 0.68 +0.5 5,181,785 - PS417_23935 0.71 -2.8
Or see this region's nucleotide sequence