Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23140 and PS417_23145 are separated by 21 nucleotides PS417_23145 and PS417_23150 are separated by 2 nucleotides PS417_23150 and PS417_23155 overlap by 1 nucleotides
PS417_23140: PS417_23140 - histidinol dehydrogenase, at 5,016,094 to 5,017,383
_23140
PS417_23145: PS417_23145 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 5,017,405 to 5,018,514
_23145
PS417_23150: PS417_23150 - Cro/Cl family transcriptional regulator, at 5,018,517 to 5,019,500
_23150
PS417_23155: PS417_23155 - pilus assembly protein PilW, at 5,019,500 to 5,020,258
_23155
Position (kb) 5017
5018
5019 Strain fitness (log2 ratio) -1
0
1
2 at 5018.588 kb on - strand at 5018.658 kb on - strand, within PS417_23150 at 5018.658 kb on - strand, within PS417_23150 at 5018.746 kb on - strand, within PS417_23150 at 5018.793 kb on - strand, within PS417_23150
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,018,588 - +1.6 5,018,658 - PS417_23150 0.14 +1.4 5,018,658 - PS417_23150 0.14 +1.5 5,018,746 - PS417_23150 0.23 +2.1 5,018,793 - PS417_23150 0.28 -0.9
Or see this region's nucleotide sequence