Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20810 and PS417_20815 are separated by 43 nucleotides PS417_20815 and PS417_20825 are separated by 321 nucleotides PS417_20825 and PS417_20830 overlap by 87 nucleotides
PS417_20810: PS417_20810 - hypothetical protein, at 4,520,188 to 4,520,526
_20810
PS417_20815: PS417_20815 - DNA polymerase III subunit gamma/tau, at 4,520,570 to 4,522,624
_20815
PS417_20825: PS417_20825 - drug:proton antiporter, at 4,522,946 to 4,523,317
_20825
PS417_20830: PS417_20830 - transporter, at 4,523,231 to 4,524,190
_20830
Position (kb)
4520
4521
4522
4523 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4519.641 kb on + strand at 4519.642 kb on - strand at 4519.642 kb on - strand at 4519.836 kb on - strand at 4519.863 kb on + strand at 4519.897 kb on - strand at 4519.914 kb on + strand at 4519.915 kb on - strand at 4520.083 kb on - strand at 4520.083 kb on - strand at 4520.084 kb on + strand at 4520.084 kb on + strand at 4520.171 kb on + strand at 4520.176 kb on - strand at 4520.544 kb on - strand at 4520.544 kb on - strand at 4520.557 kb on + strand at 4520.560 kb on + strand at 4522.712 kb on + strand at 4522.712 kb on + strand at 4522.757 kb on + strand at 4522.780 kb on + strand at 4522.781 kb on - strand at 4522.781 kb on - strand at 4522.822 kb on + strand at 4522.903 kb on + strand at 4522.905 kb on + strand at 4522.905 kb on + strand at 4522.906 kb on - strand at 4522.949 kb on + strand at 4522.949 kb on + strand at 4522.949 kb on + strand at 4522.950 kb on - strand at 4522.950 kb on - strand at 4522.950 kb on - strand at 4522.950 kb on - strand at 4522.950 kb on - strand at 4522.965 kb on - strand at 4522.965 kb on - strand at 4522.976 kb on + strand at 4522.976 kb on + strand at 4522.977 kb on - strand at 4523.009 kb on + strand, within PS417_20825 at 4523.009 kb on + strand, within PS417_20825 at 4523.010 kb on - strand, within PS417_20825 at 4523.010 kb on - strand at 4523.448 kb on + strand at 4523.493 kb on + strand, within PS417_20830 at 4523.494 kb on - strand, within PS417_20830 at 4523.509 kb on - strand, within PS417_20830
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,519,641 + -2.1 4,519,642 - -0.7 4,519,642 - -1.9 4,519,836 - +1.4 4,519,863 + -0.1 4,519,897 - -0.6 4,519,914 + +1.3 4,519,915 - -0.1 4,520,083 - -1.2 4,520,083 - +0.0 4,520,084 + -0.5 4,520,084 + +0.5 4,520,171 + +1.4 4,520,176 - -2.6 4,520,544 - -1.0 4,520,544 - +0.6 4,520,557 + -1.5 4,520,560 + -0.9 4,522,712 + +1.5 4,522,712 + +1.1 4,522,757 + +1.3 4,522,780 + +1.3 4,522,781 - +0.2 4,522,781 - -1.1 4,522,822 + -0.5 4,522,903 + +2.1 4,522,905 + +0.8 4,522,905 + +1.3 4,522,906 - +1.9 4,522,949 + -1.0 4,522,949 + -0.3 4,522,949 + -0.2 4,522,950 - +0.5 4,522,950 - -4.0 4,522,950 - +1.4 4,522,950 - -1.0 4,522,950 - -3.4 4,522,965 - +1.6 4,522,965 - +0.4 4,522,976 + -1.3 4,522,976 + -1.2 4,522,977 - -1.6 4,523,009 + PS417_20825 0.17 -1.6 4,523,009 + PS417_20825 0.17 -1.2 4,523,010 - PS417_20825 0.17 +0.1 4,523,010 - +0.9 4,523,448 + -0.7 4,523,493 + PS417_20830 0.27 +0.1 4,523,494 - PS417_20830 0.27 +0.2 4,523,509 - PS417_20830 0.29 +0.4
Or see this region's nucleotide sequence