Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19605 and PS417_19610 are separated by 65 nucleotides PS417_19610 and PS417_19615 are separated by 39 nucleotides PS417_19615 and PS417_19620 are separated by 539 nucleotides
PS417_19605: PS417_19605 - hypothetical protein, at 4,264,763 to 4,265,047
_19605
PS417_19610: PS417_19610 - molybdenum cofactor sulfurase, at 4,265,113 to 4,265,919
_19610
PS417_19615: PS417_19615 - chemotaxis protein CheW, at 4,265,959 to 4,266,894
_19615
PS417_19620: PS417_19620 - hypothetical protein, at 4,267,434 to 4,267,883
_19620
Position (kb) 4265
4266
4267 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4265.025 kb on - strand at 4265.115 kb on - strand at 4265.211 kb on - strand, within PS417_19610 at 4265.863 kb on + strand at 4265.897 kb on + strand at 4265.898 kb on - strand at 4265.954 kb on + strand at 4266.107 kb on + strand, within PS417_19615 at 4266.107 kb on + strand, within PS417_19615 at 4266.107 kb on + strand at 4266.107 kb on + strand, within PS417_19615 at 4266.107 kb on + strand, within PS417_19615 at 4266.108 kb on - strand, within PS417_19615 at 4266.108 kb on - strand, within PS417_19615 at 4266.108 kb on - strand, within PS417_19615 at 4266.500 kb on + strand, within PS417_19615 at 4266.500 kb on + strand, within PS417_19615 at 4266.501 kb on - strand, within PS417_19615 at 4266.606 kb on - strand, within PS417_19615 at 4266.619 kb on - strand, within PS417_19615 at 4266.871 kb on + strand at 4266.976 kb on - strand at 4266.976 kb on - strand at 4266.986 kb on + strand at 4266.988 kb on - strand at 4267.020 kb on + strand at 4267.094 kb on + strand at 4267.094 kb on + strand at 4267.094 kb on + strand at 4267.140 kb on + strand at 4267.144 kb on + strand at 4267.144 kb on + strand at 4267.144 kb on + strand at 4267.144 kb on + strand at 4267.144 kb on + strand at 4267.145 kb on - strand at 4267.233 kb on - strand at 4267.311 kb on + strand at 4267.312 kb on - strand at 4267.360 kb on + strand at 4267.377 kb on + strand at 4267.377 kb on + strand at 4267.378 kb on - strand at 4267.416 kb on + strand at 4267.416 kb on + strand at 4267.416 kb on + strand at 4267.416 kb on + strand at 4267.417 kb on - strand at 4267.417 kb on - strand at 4267.433 kb on + strand at 4267.433 kb on + strand at 4267.653 kb on + strand, within PS417_19620 at 4267.654 kb on - strand, within PS417_19620 at 4267.812 kb on - strand, within PS417_19620 at 4267.848 kb on + strand at 4267.889 kb on + strand at 4267.890 kb on - strand at 4267.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,265,025 - -2.2 4,265,115 - -0.2 4,265,211 - PS417_19610 0.12 -1.3 4,265,863 + +0.9 4,265,897 + -0.2 4,265,898 - -2.1 4,265,954 + -1.3 4,266,107 + PS417_19615 0.16 -2.3 4,266,107 + PS417_19615 0.16 -2.1 4,266,107 + -0.1 4,266,107 + PS417_19615 0.16 -2.1 4,266,107 + PS417_19615 0.16 -1.4 4,266,108 - PS417_19615 0.16 -1.7 4,266,108 - PS417_19615 0.16 -1.7 4,266,108 - PS417_19615 0.16 -4.2 4,266,500 + PS417_19615 0.58 -1.7 4,266,500 + PS417_19615 0.58 -1.0 4,266,501 - PS417_19615 0.58 -3.3 4,266,606 - PS417_19615 0.69 -1.8 4,266,619 - PS417_19615 0.71 +0.2 4,266,871 + -1.1 4,266,976 - -1.2 4,266,976 - -0.3 4,266,986 + -1.2 4,266,988 - -0.1 4,267,020 + +1.7 4,267,094 + -0.8 4,267,094 + -1.1 4,267,094 + +0.7 4,267,140 + -3.8 4,267,144 + -4.4 4,267,144 + -0.5 4,267,144 + -5.2 4,267,144 + -1.6 4,267,144 + -3.8 4,267,145 - -3.4 4,267,233 - -1.5 4,267,311 + -3.6 4,267,312 - -3.7 4,267,360 + -0.9 4,267,377 + +0.2 4,267,377 + -0.7 4,267,378 - -2.5 4,267,416 + +4.4 4,267,416 + -1.1 4,267,416 + +2.7 4,267,416 + +3.0 4,267,417 - -4.3 4,267,417 - -0.1 4,267,433 + -0.7 4,267,433 + -3.3 4,267,653 + PS417_19620 0.49 -2.0 4,267,654 - PS417_19620 0.49 -2.9 4,267,812 - PS417_19620 0.84 -3.0 4,267,848 + +4.0 4,267,889 + +1.6 4,267,890 - -3.5 4,267,890 - -3.5
Or see this region's nucleotide sequence