Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16095 and PS417_16100 overlap by 4 nucleotides PS417_16100 and PS417_16105 are separated by 422 nucleotides
PS417_16095: PS417_16095 - amidohydrolase, at 3,528,128 to 3,529,966
_16095
PS417_16100: PS417_16100 - antibiotic biosynthesis monooxygenase, at 3,529,963 to 3,530,553
_16100
PS417_16105: PS417_16105 - LysR family transcriptional regulator, at 3,530,976 to 3,531,884
_16105
Position (kb)
3529
3530
3531 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3529.188 kb on + strand, within PS417_16095 at 3529.243 kb on - strand, within PS417_16095 at 3529.254 kb on + strand, within PS417_16095 at 3529.737 kb on + strand, within PS417_16095 at 3529.738 kb on - strand, within PS417_16095 at 3529.966 kb on + strand at 3530.084 kb on + strand, within PS417_16100 at 3530.359 kb on + strand, within PS417_16100 at 3530.359 kb on + strand, within PS417_16100 at 3530.402 kb on - strand, within PS417_16100 at 3530.402 kb on - strand, within PS417_16100 at 3530.402 kb on - strand, within PS417_16100 at 3530.469 kb on - strand, within PS417_16100 at 3530.627 kb on + strand at 3530.627 kb on + strand at 3530.628 kb on - strand at 3530.628 kb on - strand at 3530.700 kb on - strand at 3530.758 kb on + strand at 3530.758 kb on + strand at 3530.758 kb on + strand at 3530.759 kb on - strand at 3530.993 kb on + strand at 3531.314 kb on - strand, within PS417_16105 at 3531.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,529,188 + PS417_16095 0.58 +0.1 3,529,243 - PS417_16095 0.61 -0.2 3,529,254 + PS417_16095 0.61 -1.5 3,529,737 + PS417_16095 0.87 +0.1 3,529,738 - PS417_16095 0.88 +0.4 3,529,966 + +0.1 3,530,084 + PS417_16100 0.20 -0.7 3,530,359 + PS417_16100 0.67 +0.3 3,530,359 + PS417_16100 0.67 +0.0 3,530,402 - PS417_16100 0.74 -2.4 3,530,402 - PS417_16100 0.74 -1.4 3,530,402 - PS417_16100 0.74 -1.7 3,530,469 - PS417_16100 0.86 -0.1 3,530,627 + +0.5 3,530,627 + -1.2 3,530,628 - -3.2 3,530,628 - -0.5 3,530,700 - +0.7 3,530,758 + -2.9 3,530,758 + +0.2 3,530,758 + -1.4 3,530,759 - +0.0 3,530,993 + +0.1 3,531,314 - PS417_16105 0.37 -0.1 3,531,314 - -0.2
Or see this region's nucleotide sequence