Strain Fitness in Pseudomonas simiae WCS417 around PS417_12835

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12830 and PS417_12835 are separated by 20 nucleotidesPS417_12835 and PS417_12840 are separated by 113 nucleotidesPS417_12840 and PS417_12845 are separated by 69 nucleotides PS417_12830: PS417_12830 - LysR family transcriptional regulator, at 2,808,254 to 2,809,162 _12830 PS417_12835: PS417_12835 - GNAT family acetyltransferase, at 2,809,183 to 2,809,851 _12835 PS417_12840: PS417_12840 - TetR family transcriptional regulator, at 2,809,965 to 2,810,558 _12840 PS417_12845: PS417_12845 - NAD(P)H dehydrogenase, at 2,810,628 to 2,811,227 _12845 Position (kb) 2809 2810Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2808.189 kb on + strandat 2808.223 kb on - strandat 2808.241 kb on - strandat 2808.241 kb on - strandat 2808.242 kb on + strandat 2808.514 kb on + strand, within PS417_12830at 2808.514 kb on + strand, within PS417_12830at 2808.514 kb on + strand, within PS417_12830at 2808.515 kb on - strand, within PS417_12830at 2808.833 kb on + strand, within PS417_12830at 2808.834 kb on - strand, within PS417_12830at 2808.834 kb on - strandat 2808.834 kb on - strand, within PS417_12830at 2808.834 kb on - strand, within PS417_12830at 2808.837 kb on + strand, within PS417_12830at 2808.876 kb on + strand, within PS417_12830at 2808.986 kb on + strand, within PS417_12830at 2808.987 kb on - strand, within PS417_12830at 2809.143 kb on + strandat 2809.143 kb on + strandat 2809.144 kb on - strandat 2809.201 kb on + strandat 2809.306 kb on + strand, within PS417_12835at 2809.315 kb on + strand, within PS417_12835at 2809.322 kb on - strand, within PS417_12835at 2809.348 kb on + strand, within PS417_12835at 2809.435 kb on + strand, within PS417_12835at 2809.488 kb on - strand, within PS417_12835at 2809.735 kb on - strand, within PS417_12835at 2809.735 kb on - strand, within PS417_12835at 2809.735 kb on - strand, within PS417_12835at 2809.738 kb on + strand, within PS417_12835at 2809.738 kb on + strandat 2809.738 kb on + strand, within PS417_12835at 2809.739 kb on - strand, within PS417_12835at 2809.739 kb on - strand, within PS417_12835at 2810.141 kb on + strand, within PS417_12840at 2810.254 kb on + strand, within PS417_12840at 2810.255 kb on - strand, within PS417_12840at 2810.353 kb on + strand, within PS417_12840at 2810.353 kb on + strand, within PS417_12840at 2810.354 kb on - strandat 2810.788 kb on + strand, within PS417_12845

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,808,189 + -0.4
2,808,223 - -1.5
2,808,241 - +0.6
2,808,241 - -0.0
2,808,242 + -0.3
2,808,514 + PS417_12830 0.29 +0.4
2,808,514 + PS417_12830 0.29 -0.1
2,808,514 + PS417_12830 0.29 -0.3
2,808,515 - PS417_12830 0.29 -1.2
2,808,833 + PS417_12830 0.64 -1.1
2,808,834 - PS417_12830 0.64 -1.9
2,808,834 - -0.5
2,808,834 - PS417_12830 0.64 +1.9
2,808,834 - PS417_12830 0.64 +0.4
2,808,837 + PS417_12830 0.64 +0.0
2,808,876 + PS417_12830 0.68 -0.7
2,808,986 + PS417_12830 0.81 -0.7
2,808,987 - PS417_12830 0.81 -1.2
2,809,143 + +0.7
2,809,143 + +0.5
2,809,144 - +0.6
2,809,201 + +1.2
2,809,306 + PS417_12835 0.18 -2.9
2,809,315 + PS417_12835 0.20 +0.8
2,809,322 - PS417_12835 0.21 -0.5
2,809,348 + PS417_12835 0.25 -0.6
2,809,435 + PS417_12835 0.38 +0.1
2,809,488 - PS417_12835 0.46 -1.2
2,809,735 - PS417_12835 0.83 +0.2
2,809,735 - PS417_12835 0.83 -2.5
2,809,735 - PS417_12835 0.83 +0.1
2,809,738 + PS417_12835 0.83 +1.6
2,809,738 + -0.9
2,809,738 + PS417_12835 0.83 -0.1
2,809,739 - PS417_12835 0.83 +0.4
2,809,739 - PS417_12835 0.83 -2.3
2,810,141 + PS417_12840 0.30 -2.9
2,810,254 + PS417_12840 0.49 +0.3
2,810,255 - PS417_12840 0.49 +0.4
2,810,353 + PS417_12840 0.65 -0.0
2,810,353 + PS417_12840 0.65 -0.7
2,810,354 - +0.5
2,810,788 + PS417_12845 0.27 +0.3

Or see this region's nucleotide sequence