Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12225 and PS417_12230 are separated by 30 nucleotides PS417_12230 and PS417_12235 are separated by 64 nucleotides PS417_12235 and PS417_12240 are separated by 127 nucleotides
PS417_12225: PS417_12225 - SAM-dependent methyltransferase, at 2,657,747 to 2,658,505
_12225
PS417_12230: PS417_12230 - ribonuclease H, at 2,658,536 to 2,658,988
_12230
PS417_12235: PS417_12235 - DNA polymerase III subunit epsilon, at 2,659,053 to 2,659,799
_12235
PS417_12240: PS417_12240 - lysine decarboxylase, at 2,659,927 to 2,662,182
_12240
Position (kb)
2659
2660 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2659.004 kb on + strand at 2659.007 kb on + strand at 2659.833 kb on + strand at 2659.834 kb on - strand at 2659.889 kb on + strand at 2659.916 kb on + strand at 2660.142 kb on + strand at 2660.143 kb on - strand at 2660.233 kb on - strand, within PS417_12240 at 2660.354 kb on - strand, within PS417_12240 at 2660.354 kb on - strand, within PS417_12240 at 2660.416 kb on + strand, within PS417_12240 at 2660.416 kb on + strand, within PS417_12240 at 2660.764 kb on + strand, within PS417_12240 at 2660.764 kb on + strand, within PS417_12240 at 2660.765 kb on - strand, within PS417_12240 at 2660.765 kb on - strand, within PS417_12240 at 2660.765 kb on - strand, within PS417_12240
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,659,004 + -0.1 2,659,007 + -2.4 2,659,833 + +0.7 2,659,834 - -1.7 2,659,889 + -0.9 2,659,916 + -2.2 2,660,142 + -0.1 2,660,143 - +2.2 2,660,233 - PS417_12240 0.14 -1.3 2,660,354 - PS417_12240 0.19 -2.8 2,660,354 - PS417_12240 0.19 +1.2 2,660,416 + PS417_12240 0.22 +1.0 2,660,416 + PS417_12240 0.22 +3.7 2,660,764 + PS417_12240 0.37 +0.6 2,660,764 + PS417_12240 0.37 +0.4 2,660,765 - PS417_12240 0.37 -1.2 2,660,765 - PS417_12240 0.37 +1.1 2,660,765 - PS417_12240 0.37 +0.4
Or see this region's nucleotide sequence