Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10820 and PS417_10825 are separated by 156 nucleotides PS417_10825 and PS417_10830 are separated by 6 nucleotides
PS417_10820: PS417_10820 - N-methylproline demethylase, at 2,312,299 to 2,314,335
_10820
PS417_10825: PS417_10825 - glycine/betaine ABC transporter substrate-binding protein, at 2,314,492 to 2,315,391
_10825
PS417_10830: PS417_10830 - LysR family transcriptional regulator, at 2,315,398 to 2,316,315
_10830
Position (kb)
2314
2315
2316 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2313.572 kb on - strand, within PS417_10820 at 2313.675 kb on - strand, within PS417_10820 at 2313.781 kb on + strand, within PS417_10820 at 2313.827 kb on + strand, within PS417_10820 at 2313.868 kb on - strand, within PS417_10820 at 2313.888 kb on - strand, within PS417_10820 at 2313.888 kb on - strand, within PS417_10820 at 2314.106 kb on + strand, within PS417_10820 at 2314.398 kb on + strand at 2314.795 kb on + strand, within PS417_10825 at 2314.796 kb on - strand, within PS417_10825 at 2314.796 kb on - strand, within PS417_10825 at 2314.829 kb on - strand, within PS417_10825 at 2314.829 kb on - strand, within PS417_10825 at 2314.996 kb on + strand, within PS417_10825 at 2315.012 kb on - strand, within PS417_10825 at 2315.399 kb on + strand at 2315.399 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,313,572 - PS417_10820 0.62 +1.0 2,313,675 - PS417_10820 0.68 -0.4 2,313,781 + PS417_10820 0.73 +0.3 2,313,827 + PS417_10820 0.75 -0.3 2,313,868 - PS417_10820 0.77 +0.4 2,313,888 - PS417_10820 0.78 -1.3 2,313,888 - PS417_10820 0.78 +4.1 2,314,106 + PS417_10820 0.89 -0.2 2,314,398 + +0.2 2,314,795 + PS417_10825 0.34 +0.5 2,314,796 - PS417_10825 0.34 +0.2 2,314,796 - PS417_10825 0.34 +0.3 2,314,829 - PS417_10825 0.37 +2.0 2,314,829 - PS417_10825 0.37 +0.1 2,314,996 + PS417_10825 0.56 +0.5 2,315,012 - PS417_10825 0.58 +1.2 2,315,399 + +1.0 2,315,399 + +1.2
Or see this region's nucleotide sequence