Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10345 and PS417_10350 are separated by 173 nucleotides PS417_10350 and PS417_10355 are separated by 7 nucleotides
PS417_10345: PS417_10345 - MFS transporter, at 2,210,850 to 2,212,076
_10345
PS417_10350: PS417_10350 - multidrug MFS transporter, at 2,212,250 to 2,213,542
_10350
PS417_10355: PS417_10355 - transcriptional regulator, at 2,213,550 to 2,216,420
_10355
Position (kb)
2212
2213
2214 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2211.355 kb on + strand, within PS417_10345 at 2211.647 kb on + strand, within PS417_10345 at 2211.682 kb on - strand, within PS417_10345 at 2211.682 kb on - strand, within PS417_10345 at 2211.716 kb on + strand, within PS417_10345 at 2211.716 kb on + strand, within PS417_10345 at 2212.009 kb on - strand at 2212.142 kb on - strand at 2212.163 kb on + strand at 2212.163 kb on + strand at 2212.163 kb on + strand at 2212.163 kb on + strand at 2212.164 kb on - strand at 2212.183 kb on - strand at 2212.370 kb on - strand at 2212.850 kb on + strand, within PS417_10350 at 2212.859 kb on + strand, within PS417_10350 at 2212.859 kb on + strand, within PS417_10350 at 2212.859 kb on + strand, within PS417_10350 at 2212.859 kb on + strand, within PS417_10350 at 2212.860 kb on - strand, within PS417_10350 at 2212.860 kb on - strand, within PS417_10350 at 2213.040 kb on - strand, within PS417_10350 at 2213.247 kb on - strand, within PS417_10350 at 2213.306 kb on - strand, within PS417_10350 at 2213.306 kb on - strand, within PS417_10350 at 2213.306 kb on - strand, within PS417_10350 at 2213.306 kb on - strand, within PS417_10350 at 2213.429 kb on + strand at 2213.429 kb on + strand at 2213.430 kb on - strand at 2213.432 kb on + strand at 2213.433 kb on - strand at 2213.433 kb on - strand at 2213.433 kb on - strand at 2213.434 kb on + strand at 2213.647 kb on + strand at 2213.647 kb on + strand at 2214.082 kb on + strand, within PS417_10355 at 2214.083 kb on - strand, within PS417_10355 at 2214.167 kb on - strand, within PS417_10355 at 2214.200 kb on - strand, within PS417_10355 at 2214.344 kb on + strand, within PS417_10355 at 2214.427 kb on + strand, within PS417_10355 at 2214.527 kb on + strand, within PS417_10355 at 2214.528 kb on - strand, within PS417_10355
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,211,355 + PS417_10345 0.41 -3.0 2,211,647 + PS417_10345 0.65 -0.3 2,211,682 - PS417_10345 0.68 -0.0 2,211,682 - PS417_10345 0.68 +2.3 2,211,716 + PS417_10345 0.71 -0.5 2,211,716 + PS417_10345 0.71 -0.1 2,212,009 - -1.8 2,212,142 - -2.8 2,212,163 + -0.2 2,212,163 + -2.2 2,212,163 + -1.9 2,212,163 + -0.6 2,212,164 - +0.8 2,212,183 - +1.6 2,212,370 - -0.4 2,212,850 + PS417_10350 0.46 -2.1 2,212,859 + PS417_10350 0.47 -2.2 2,212,859 + PS417_10350 0.47 +0.1 2,212,859 + PS417_10350 0.47 +0.1 2,212,859 + PS417_10350 0.47 +2.2 2,212,860 - PS417_10350 0.47 +0.2 2,212,860 - PS417_10350 0.47 +0.2 2,213,040 - PS417_10350 0.61 -0.3 2,213,247 - PS417_10350 0.77 +0.3 2,213,306 - PS417_10350 0.82 -0.2 2,213,306 - PS417_10350 0.82 +0.0 2,213,306 - PS417_10350 0.82 -0.8 2,213,306 - PS417_10350 0.82 -0.1 2,213,429 + -0.5 2,213,429 + -1.3 2,213,430 - -2.7 2,213,432 + -0.4 2,213,433 - +0.5 2,213,433 - -0.0 2,213,433 - +2.7 2,213,434 + -0.2 2,213,647 + +0.7 2,213,647 + -0.1 2,214,082 + PS417_10355 0.19 +1.3 2,214,083 - PS417_10355 0.19 +0.5 2,214,167 - PS417_10355 0.21 +0.2 2,214,200 - PS417_10355 0.23 -1.1 2,214,344 + PS417_10355 0.28 -0.0 2,214,427 + PS417_10355 0.31 -0.2 2,214,527 + PS417_10355 0.34 +0.1 2,214,528 - PS417_10355 0.34 -0.0
Or see this region's nucleotide sequence