Strain Fitness in Pseudomonas simiae WCS417 around PS417_10350

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10345 and PS417_10350 are separated by 173 nucleotidesPS417_10350 and PS417_10355 are separated by 7 nucleotides PS417_10345: PS417_10345 - MFS transporter, at 2,210,850 to 2,212,076 _10345 PS417_10350: PS417_10350 - multidrug MFS transporter, at 2,212,250 to 2,213,542 _10350 PS417_10355: PS417_10355 - transcriptional regulator, at 2,213,550 to 2,216,420 _10355 Position (kb) 2212 2213 2214Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2211.355 kb on + strand, within PS417_10345at 2211.647 kb on + strand, within PS417_10345at 2211.682 kb on - strand, within PS417_10345at 2211.682 kb on - strand, within PS417_10345at 2211.716 kb on + strand, within PS417_10345at 2211.716 kb on + strand, within PS417_10345at 2212.009 kb on - strandat 2212.142 kb on - strandat 2212.163 kb on + strandat 2212.163 kb on + strandat 2212.163 kb on + strandat 2212.163 kb on + strandat 2212.164 kb on - strandat 2212.183 kb on - strandat 2212.370 kb on - strandat 2212.850 kb on + strand, within PS417_10350at 2212.859 kb on + strand, within PS417_10350at 2212.859 kb on + strand, within PS417_10350at 2212.859 kb on + strand, within PS417_10350at 2212.859 kb on + strand, within PS417_10350at 2212.860 kb on - strand, within PS417_10350at 2212.860 kb on - strand, within PS417_10350at 2213.040 kb on - strand, within PS417_10350at 2213.247 kb on - strand, within PS417_10350at 2213.306 kb on - strand, within PS417_10350at 2213.306 kb on - strand, within PS417_10350at 2213.306 kb on - strand, within PS417_10350at 2213.306 kb on - strand, within PS417_10350at 2213.429 kb on + strandat 2213.429 kb on + strandat 2213.430 kb on - strandat 2213.432 kb on + strandat 2213.433 kb on - strandat 2213.433 kb on - strandat 2213.433 kb on - strandat 2213.434 kb on + strandat 2213.647 kb on + strandat 2213.647 kb on + strandat 2214.082 kb on + strand, within PS417_10355at 2214.083 kb on - strand, within PS417_10355at 2214.167 kb on - strand, within PS417_10355at 2214.200 kb on - strand, within PS417_10355at 2214.344 kb on + strand, within PS417_10355at 2214.427 kb on + strand, within PS417_10355at 2214.527 kb on + strand, within PS417_10355at 2214.528 kb on - strand, within PS417_10355

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,211,355 + PS417_10345 0.41 -3.0
2,211,647 + PS417_10345 0.65 -0.3
2,211,682 - PS417_10345 0.68 -0.0
2,211,682 - PS417_10345 0.68 +2.3
2,211,716 + PS417_10345 0.71 -0.5
2,211,716 + PS417_10345 0.71 -0.1
2,212,009 - -1.8
2,212,142 - -2.8
2,212,163 + -0.2
2,212,163 + -2.2
2,212,163 + -1.9
2,212,163 + -0.6
2,212,164 - +0.8
2,212,183 - +1.6
2,212,370 - -0.4
2,212,850 + PS417_10350 0.46 -2.1
2,212,859 + PS417_10350 0.47 -2.2
2,212,859 + PS417_10350 0.47 +0.1
2,212,859 + PS417_10350 0.47 +0.1
2,212,859 + PS417_10350 0.47 +2.2
2,212,860 - PS417_10350 0.47 +0.2
2,212,860 - PS417_10350 0.47 +0.2
2,213,040 - PS417_10350 0.61 -0.3
2,213,247 - PS417_10350 0.77 +0.3
2,213,306 - PS417_10350 0.82 -0.2
2,213,306 - PS417_10350 0.82 +0.0
2,213,306 - PS417_10350 0.82 -0.8
2,213,306 - PS417_10350 0.82 -0.1
2,213,429 + -0.5
2,213,429 + -1.3
2,213,430 - -2.7
2,213,432 + -0.4
2,213,433 - +0.5
2,213,433 - -0.0
2,213,433 - +2.7
2,213,434 + -0.2
2,213,647 + +0.7
2,213,647 + -0.1
2,214,082 + PS417_10355 0.19 +1.3
2,214,083 - PS417_10355 0.19 +0.5
2,214,167 - PS417_10355 0.21 +0.2
2,214,200 - PS417_10355 0.23 -1.1
2,214,344 + PS417_10355 0.28 -0.0
2,214,427 + PS417_10355 0.31 -0.2
2,214,527 + PS417_10355 0.34 +0.1
2,214,528 - PS417_10355 0.34 -0.0

Or see this region's nucleotide sequence