Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09685 and PS417_09690 overlap by 8 nucleotides PS417_09690 and PS417_09695 are separated by 253 nucleotides
PS417_09685: PS417_09685 - glucoamylase, at 2,099,418 to 2,101,244
_09685
PS417_09690: PS417_09690 - sugar dehydrogenase, at 2,101,237 to 2,102,037
_09690
PS417_09695: PS417_09695 - hydrolase, at 2,102,291 to 2,103,013
_09695
Position (kb)
2101
2102
2103 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2100.362 kb on + strand, within PS417_09685 at 2100.364 kb on + strand, within PS417_09685 at 2100.364 kb on + strand, within PS417_09685 at 2100.364 kb on + strand at 2100.365 kb on - strand, within PS417_09685 at 2100.365 kb on - strand, within PS417_09685 at 2100.365 kb on - strand, within PS417_09685 at 2100.584 kb on - strand, within PS417_09685 at 2100.848 kb on - strand, within PS417_09685 at 2101.024 kb on + strand, within PS417_09685 at 2101.308 kb on - strand at 2101.544 kb on + strand, within PS417_09690 at 2101.926 kb on - strand, within PS417_09690 at 2101.926 kb on - strand, within PS417_09690 at 2101.926 kb on - strand, within PS417_09690 at 2102.012 kb on - strand at 2102.280 kb on - strand at 2102.347 kb on - strand at 2102.360 kb on - strand at 2102.564 kb on - strand, within PS417_09695 at 2102.564 kb on - strand, within PS417_09695 at 2102.715 kb on + strand, within PS417_09695 at 2102.994 kb on + strand at 2103.016 kb on + strand at 2103.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,100,362 + PS417_09685 0.52 -0.3 2,100,364 + PS417_09685 0.52 -5.9 2,100,364 + PS417_09685 0.52 -0.2 2,100,364 + +0.7 2,100,365 - PS417_09685 0.52 -1.3 2,100,365 - PS417_09685 0.52 +0.3 2,100,365 - PS417_09685 0.52 -0.3 2,100,584 - PS417_09685 0.64 +0.0 2,100,848 - PS417_09685 0.78 +0.1 2,101,024 + PS417_09685 0.88 +0.8 2,101,308 - -3.0 2,101,544 + PS417_09690 0.38 +0.6 2,101,926 - PS417_09690 0.86 -0.2 2,101,926 - PS417_09690 0.86 +0.3 2,101,926 - PS417_09690 0.86 +0.9 2,102,012 - +0.4 2,102,280 - +1.3 2,102,347 - -3.2 2,102,360 - -0.2 2,102,564 - PS417_09695 0.38 +0.5 2,102,564 - PS417_09695 0.38 -3.1 2,102,715 + PS417_09695 0.59 +0.7 2,102,994 + -0.8 2,103,016 + +1.6 2,103,017 - -0.6
Or see this region's nucleotide sequence