Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07340 and PS417_07345 are separated by 54 nucleotides PS417_07345 and PS417_07350 are separated by 30 nucleotides PS417_07350 and PS417_07355 are separated by 112 nucleotides
PS417_07340: PS417_07340 - calcium channel protein, at 1,618,429 to 1,619,268
_07340
PS417_07345: PS417_07345 - cyanate hydratase, at 1,619,323 to 1,619,793
_07345
PS417_07350: PS417_07350 - carbonic anhydrase, at 1,619,824 to 1,620,456
_07350
PS417_07355: PS417_07355 - transcriptional regulator, at 1,620,569 to 1,621,435
_07355
Position (kb)
1619
1620 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1618.356 kb on + strand at 1618.360 kb on - strand at 1618.367 kb on + strand at 1618.367 kb on + strand at 1618.368 kb on - strand at 1618.412 kb on + strand at 1618.412 kb on + strand at 1618.428 kb on - strand at 1618.428 kb on - strand at 1618.430 kb on + strand at 1618.439 kb on + strand at 1618.440 kb on - strand at 1618.440 kb on - strand at 1618.442 kb on + strand at 1618.479 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.529 kb on + strand, within PS417_07340 at 1618.529 kb on + strand at 1618.530 kb on - strand, within PS417_07340 at 1618.535 kb on + strand, within PS417_07340 at 1618.535 kb on + strand, within PS417_07340 at 1618.536 kb on - strand, within PS417_07340 at 1618.658 kb on + strand, within PS417_07340 at 1618.659 kb on - strand, within PS417_07340 at 1618.659 kb on - strand, within PS417_07340 at 1618.659 kb on - strand, within PS417_07340 at 1618.659 kb on - strand, within PS417_07340 at 1618.691 kb on + strand, within PS417_07340 at 1618.691 kb on + strand, within PS417_07340 at 1618.691 kb on + strand, within PS417_07340 at 1618.826 kb on + strand, within PS417_07340 at 1618.827 kb on - strand, within PS417_07340 at 1618.827 kb on - strand, within PS417_07340 at 1618.862 kb on + strand, within PS417_07340 at 1619.076 kb on - strand, within PS417_07340 at 1619.076 kb on - strand, within PS417_07340 at 1619.144 kb on + strand, within PS417_07340 at 1619.145 kb on - strand, within PS417_07340 at 1619.147 kb on + strand, within PS417_07340 at 1619.260 kb on + strand at 1619.261 kb on - strand at 1619.261 kb on - strand at 1619.261 kb on - strand at 1619.345 kb on + strand at 1619.345 kb on + strand at 1619.346 kb on - strand at 1619.510 kb on + strand, within PS417_07345 at 1619.913 kb on - strand, within PS417_07350 at 1619.913 kb on - strand, within PS417_07350 at 1620.510 kb on - strand at 1620.552 kb on + strand at 1620.553 kb on - strand at 1620.758 kb on + strand, within PS417_07355 at 1620.758 kb on + strand, within PS417_07355 at 1620.758 kb on + strand, within PS417_07355 at 1620.758 kb on + strand, within PS417_07355 at 1620.758 kb on + strand, within PS417_07355 at 1620.759 kb on - strand, within PS417_07355 at 1620.759 kb on - strand, within PS417_07355
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,618,356 + -0.2 1,618,360 - -0.6 1,618,367 + +0.7 1,618,367 + +1.4 1,618,368 - -0.1 1,618,412 + -0.3 1,618,412 + -0.3 1,618,428 - -0.6 1,618,428 - -2.3 1,618,430 + +0.7 1,618,439 + +1.4 1,618,440 - +0.0 1,618,440 - -1.2 1,618,442 + +0.3 1,618,479 + -2.6 1,618,481 + -0.1 1,618,481 + -1.5 1,618,481 + +0.3 1,618,481 + +0.1 1,618,481 + -0.9 1,618,481 + -0.6 1,618,481 + -0.9 1,618,481 + +0.4 1,618,481 + -0.6 1,618,482 - +0.0 1,618,482 - +0.1 1,618,482 - -0.4 1,618,482 - +0.1 1,618,482 - +1.6 1,618,482 - +0.4 1,618,482 - -0.9 1,618,482 - -1.1 1,618,529 + PS417_07340 0.12 -0.8 1,618,529 + -1.1 1,618,530 - PS417_07340 0.12 -1.6 1,618,535 + PS417_07340 0.13 +0.6 1,618,535 + PS417_07340 0.13 -1.4 1,618,536 - PS417_07340 0.13 -0.2 1,618,658 + PS417_07340 0.27 -0.2 1,618,659 - PS417_07340 0.27 -0.7 1,618,659 - PS417_07340 0.27 +2.4 1,618,659 - PS417_07340 0.27 +0.2 1,618,659 - PS417_07340 0.27 -2.5 1,618,691 + PS417_07340 0.31 +0.5 1,618,691 + PS417_07340 0.31 +0.2 1,618,691 + PS417_07340 0.31 -0.7 1,618,826 + PS417_07340 0.47 -0.1 1,618,827 - PS417_07340 0.47 -0.3 1,618,827 - PS417_07340 0.47 +0.6 1,618,862 + PS417_07340 0.52 -0.2 1,619,076 - PS417_07340 0.77 -1.1 1,619,076 - PS417_07340 0.77 +1.4 1,619,144 + PS417_07340 0.85 -0.4 1,619,145 - PS417_07340 0.85 +1.5 1,619,147 + PS417_07340 0.85 +0.7 1,619,260 + -2.1 1,619,261 - +1.6 1,619,261 - -0.6 1,619,261 - +0.2 1,619,345 + +0.8 1,619,345 + +1.2 1,619,346 - +0.6 1,619,510 + PS417_07345 0.40 -0.2 1,619,913 - PS417_07350 0.14 -1.3 1,619,913 - PS417_07350 0.14 +2.7 1,620,510 - +0.7 1,620,552 + -1.4 1,620,553 - +0.1 1,620,758 + PS417_07355 0.22 +1.6 1,620,758 + PS417_07355 0.22 +0.6 1,620,758 + PS417_07355 0.22 -1.2 1,620,758 + PS417_07355 0.22 -1.9 1,620,758 + PS417_07355 0.22 -0.5 1,620,759 - PS417_07355 0.22 +0.2 1,620,759 - PS417_07355 0.22 +0.2
Or see this region's nucleotide sequence