Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07330 and PS417_07335 are separated by 66 nucleotides PS417_07335 and PS417_07340 are separated by 132 nucleotides
PS417_07330: PS417_07330 - 4-hydroxybenzoate 3-monooxygenase, at 1,615,519 to 1,616,712
_07330
PS417_07335: PS417_07335 - DSBA oxidoreductase, at 1,616,779 to 1,618,296
_07335
PS417_07340: PS417_07340 - calcium channel protein, at 1,618,429 to 1,619,268
_07340
Position (kb)
1616
1617
1618
1619 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1615.825 kb on + strand, within PS417_07330 at 1615.826 kb on - strand, within PS417_07330 at 1615.891 kb on + strand, within PS417_07330 at 1615.891 kb on + strand, within PS417_07330 at 1615.892 kb on - strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.988 kb on - strand, within PS417_07330 at 1616.128 kb on + strand, within PS417_07330 at 1616.129 kb on - strand, within PS417_07330 at 1616.188 kb on + strand, within PS417_07330 at 1616.188 kb on + strand, within PS417_07330 at 1616.192 kb on - strand, within PS417_07330 at 1616.510 kb on - strand, within PS417_07330 at 1616.635 kb on + strand at 1616.636 kb on - strand at 1616.710 kb on + strand at 1616.711 kb on - strand at 1616.953 kb on + strand, within PS417_07335 at 1616.954 kb on - strand, within PS417_07335 at 1616.954 kb on - strand, within PS417_07335 at 1616.954 kb on - strand, within PS417_07335 at 1617.220 kb on + strand, within PS417_07335 at 1617.220 kb on + strand, within PS417_07335 at 1617.221 kb on - strand, within PS417_07335 at 1617.260 kb on - strand, within PS417_07335 at 1617.272 kb on - strand, within PS417_07335 at 1617.328 kb on + strand, within PS417_07335 at 1617.329 kb on - strand, within PS417_07335 at 1617.389 kb on - strand, within PS417_07335 at 1617.606 kb on + strand, within PS417_07335 at 1617.606 kb on + strand, within PS417_07335 at 1617.606 kb on + strand, within PS417_07335 at 1617.745 kb on + strand at 1617.782 kb on - strand, within PS417_07335 at 1618.294 kb on + strand at 1618.295 kb on - strand at 1618.356 kb on + strand at 1618.360 kb on - strand at 1618.367 kb on + strand at 1618.367 kb on + strand at 1618.368 kb on - strand at 1618.412 kb on + strand at 1618.412 kb on + strand at 1618.428 kb on - strand at 1618.428 kb on - strand at 1618.430 kb on + strand at 1618.439 kb on + strand at 1618.440 kb on - strand at 1618.440 kb on - strand at 1618.442 kb on + strand at 1618.479 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.481 kb on + strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.482 kb on - strand at 1618.529 kb on + strand, within PS417_07340 at 1618.529 kb on + strand at 1618.530 kb on - strand, within PS417_07340 at 1618.535 kb on + strand, within PS417_07340 at 1618.535 kb on + strand, within PS417_07340 at 1618.536 kb on - strand, within PS417_07340 at 1618.658 kb on + strand, within PS417_07340 at 1618.659 kb on - strand, within PS417_07340 at 1618.659 kb on - strand, within PS417_07340 at 1618.659 kb on - strand, within PS417_07340 at 1618.659 kb on - strand, within PS417_07340 at 1618.691 kb on + strand, within PS417_07340 at 1618.691 kb on + strand, within PS417_07340 at 1618.691 kb on + strand, within PS417_07340 at 1618.826 kb on + strand, within PS417_07340 at 1618.827 kb on - strand, within PS417_07340 at 1618.827 kb on - strand, within PS417_07340 at 1618.862 kb on + strand, within PS417_07340 at 1619.076 kb on - strand, within PS417_07340 at 1619.076 kb on - strand, within PS417_07340 at 1619.144 kb on + strand, within PS417_07340 at 1619.145 kb on - strand, within PS417_07340 at 1619.147 kb on + strand, within PS417_07340 at 1619.260 kb on + strand at 1619.261 kb on - strand at 1619.261 kb on - strand at 1619.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,615,825 + PS417_07330 0.26 +0.5 1,615,826 - PS417_07330 0.26 -0.6 1,615,891 + PS417_07330 0.31 -1.4 1,615,891 + PS417_07330 0.31 -1.6 1,615,892 - PS417_07330 0.31 -1.0 1,615,987 + PS417_07330 0.39 +1.5 1,615,987 + PS417_07330 0.39 -0.5 1,615,987 + PS417_07330 0.39 -0.3 1,615,987 + PS417_07330 0.39 +0.7 1,615,987 + PS417_07330 0.39 +0.3 1,615,987 + PS417_07330 0.39 -0.9 1,615,987 + PS417_07330 0.39 -1.7 1,615,988 - PS417_07330 0.39 -1.2 1,616,128 + PS417_07330 0.51 -0.3 1,616,129 - PS417_07330 0.51 -0.8 1,616,188 + PS417_07330 0.56 -0.7 1,616,188 + PS417_07330 0.56 +0.3 1,616,192 - PS417_07330 0.56 +1.0 1,616,510 - PS417_07330 0.83 -1.2 1,616,635 + +0.8 1,616,636 - +1.6 1,616,710 + +0.8 1,616,711 - -0.2 1,616,953 + PS417_07335 0.11 +0.7 1,616,954 - PS417_07335 0.12 -0.3 1,616,954 - PS417_07335 0.12 +0.0 1,616,954 - PS417_07335 0.12 -3.8 1,617,220 + PS417_07335 0.29 +0.3 1,617,220 + PS417_07335 0.29 -0.8 1,617,221 - PS417_07335 0.29 -0.7 1,617,260 - PS417_07335 0.32 +0.4 1,617,272 - PS417_07335 0.32 -0.6 1,617,328 + PS417_07335 0.36 -1.8 1,617,329 - PS417_07335 0.36 +0.2 1,617,389 - PS417_07335 0.40 +0.9 1,617,606 + PS417_07335 0.54 +1.1 1,617,606 + PS417_07335 0.54 +0.5 1,617,606 + PS417_07335 0.54 -1.9 1,617,745 + -1.1 1,617,782 - PS417_07335 0.66 -0.1 1,618,294 + -0.2 1,618,295 - +0.9 1,618,356 + -0.2 1,618,360 - -0.6 1,618,367 + +0.7 1,618,367 + +1.4 1,618,368 - -0.1 1,618,412 + -0.3 1,618,412 + -0.3 1,618,428 - -0.6 1,618,428 - -2.3 1,618,430 + +0.7 1,618,439 + +1.4 1,618,440 - +0.0 1,618,440 - -1.2 1,618,442 + +0.3 1,618,479 + -2.6 1,618,481 + -0.1 1,618,481 + -1.5 1,618,481 + +0.3 1,618,481 + +0.1 1,618,481 + -0.9 1,618,481 + -0.6 1,618,481 + -0.9 1,618,481 + +0.4 1,618,481 + -0.6 1,618,482 - +0.0 1,618,482 - +0.1 1,618,482 - -0.4 1,618,482 - +0.1 1,618,482 - +1.6 1,618,482 - +0.4 1,618,482 - -0.9 1,618,482 - -1.1 1,618,529 + PS417_07340 0.12 -0.8 1,618,529 + -1.1 1,618,530 - PS417_07340 0.12 -1.6 1,618,535 + PS417_07340 0.13 +0.6 1,618,535 + PS417_07340 0.13 -1.4 1,618,536 - PS417_07340 0.13 -0.2 1,618,658 + PS417_07340 0.27 -0.2 1,618,659 - PS417_07340 0.27 -0.7 1,618,659 - PS417_07340 0.27 +2.4 1,618,659 - PS417_07340 0.27 +0.2 1,618,659 - PS417_07340 0.27 -2.5 1,618,691 + PS417_07340 0.31 +0.5 1,618,691 + PS417_07340 0.31 +0.2 1,618,691 + PS417_07340 0.31 -0.7 1,618,826 + PS417_07340 0.47 -0.1 1,618,827 - PS417_07340 0.47 -0.3 1,618,827 - PS417_07340 0.47 +0.6 1,618,862 + PS417_07340 0.52 -0.2 1,619,076 - PS417_07340 0.77 -1.1 1,619,076 - PS417_07340 0.77 +1.4 1,619,144 + PS417_07340 0.85 -0.4 1,619,145 - PS417_07340 0.85 +1.5 1,619,147 + PS417_07340 0.85 +0.7 1,619,260 + -2.1 1,619,261 - +1.6 1,619,261 - -0.6 1,619,261 - +0.2
Or see this region's nucleotide sequence