Strain Fitness in Pseudomonas simiae WCS417 around PS417_00595

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00585 and PS417_00590 are separated by 412 nucleotidesPS417_00590 and PS417_00595 are separated by 284 nucleotidesPS417_00595 and PS417_00600 are separated by 45 nucleotidesPS417_00600 and PS417_00605 are separated by 18 nucleotides PS417_00585: PS417_00585 - CoA-transferase, at 117,327 to 118,547 _00585 PS417_00590: PS417_00590 - 5S ribosomal RNA, at 118,960 to 119,075 _00590 PS417_00595: PS417_00595 - chemotaxis protein, at 119,360 to 121,240 _00595 PS417_00600: PS417_00600 - polyketide cyclase, at 121,286 to 121,744 _00600 PS417_00605: PS417_00605 - peptide transporter, at 121,763 to 125,140 _00605 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 118.469 kb on + strandat 118.470 kb on - strandat 118.492 kb on + strandat 118.493 kb on - strandat 118.493 kb on - strandat 118.541 kb on + strandat 118.559 kb on + strandat 118.559 kb on + strandat 118.560 kb on - strandat 118.560 kb on - strandat 118.560 kb on - strandat 118.560 kb on - strandat 118.561 kb on + strandat 118.561 kb on + strandat 118.563 kb on + strandat 118.563 kb on + strandat 118.563 kb on + strandat 118.564 kb on - strandat 118.564 kb on - strandat 118.564 kb on - strandat 118.564 kb on - strandat 118.564 kb on - strandat 118.564 kb on - strandat 118.564 kb on - strandat 118.613 kb on - strandat 118.662 kb on - strandat 118.662 kb on - strandat 118.972 kb on - strand, within PS417_00590at 118.972 kb on - strand, within PS417_00590at 119.126 kb on - strandat 119.133 kb on + strandat 119.134 kb on - strandat 119.193 kb on - strandat 119.193 kb on - strandat 119.205 kb on + strandat 119.206 kb on - strandat 119.206 kb on - strandat 119.295 kb on + strandat 119.295 kb on + strandat 119.296 kb on - strandat 119.296 kb on - strandat 119.298 kb on - strandat 119.303 kb on + strandat 119.303 kb on + strandat 119.303 kb on + strandat 119.304 kb on - strandat 119.304 kb on - strandat 119.368 kb on + strandat 119.439 kb on - strandat 119.439 kb on - strandat 119.439 kb on - strandat 119.439 kb on - strandat 119.447 kb on + strandat 119.448 kb on - strandat 119.547 kb on + strandat 119.578 kb on - strand, within PS417_00595at 119.654 kb on + strand, within PS417_00595at 119.654 kb on + strand, within PS417_00595at 119.654 kb on + strand, within PS417_00595at 119.655 kb on - strand, within PS417_00595at 119.739 kb on - strand, within PS417_00595at 119.739 kb on - strand, within PS417_00595at 119.783 kb on + strand, within PS417_00595at 119.784 kb on - strand, within PS417_00595at 119.784 kb on - strand, within PS417_00595at 119.784 kb on - strand, within PS417_00595at 119.784 kb on - strand, within PS417_00595at 119.797 kb on - strand, within PS417_00595at 120.008 kb on + strand, within PS417_00595at 120.008 kb on + strand, within PS417_00595at 120.009 kb on - strand, within PS417_00595at 120.009 kb on - strand, within PS417_00595at 120.085 kb on + strandat 120.102 kb on + strand, within PS417_00595at 120.119 kb on + strand, within PS417_00595at 120.119 kb on + strand, within PS417_00595at 120.119 kb on + strand, within PS417_00595at 120.120 kb on - strand, within PS417_00595at 120.120 kb on - strand, within PS417_00595at 120.120 kb on - strand, within PS417_00595at 120.153 kb on - strand, within PS417_00595at 120.176 kb on - strand, within PS417_00595at 120.208 kb on - strand, within PS417_00595at 120.313 kb on - strand, within PS417_00595at 120.382 kb on - strand, within PS417_00595at 120.382 kb on - strand, within PS417_00595at 120.388 kb on + strand, within PS417_00595at 120.389 kb on - strand, within PS417_00595at 120.453 kb on + strand, within PS417_00595at 120.454 kb on - strand, within PS417_00595at 120.475 kb on + strand, within PS417_00595at 120.476 kb on - strand, within PS417_00595at 120.566 kb on - strand, within PS417_00595at 121.470 kb on + strand, within PS417_00600at 121.471 kb on - strand, within PS417_00600at 121.471 kb on - strand, within PS417_00600at 121.471 kb on - strand, within PS417_00600at 121.538 kb on - strand, within PS417_00600at 121.538 kb on - strand, within PS417_00600at 121.594 kb on + strandat 121.595 kb on - strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.644 kb on - strand, within PS417_00600at 121.644 kb on - strand, within PS417_00600at 121.644 kb on - strand, within PS417_00600at 121.691 kb on + strand, within PS417_00600at 121.723 kb on + strandat 121.744 kb on + strandat 121.744 kb on + strandat 121.745 kb on - strandat 121.788 kb on + strandat 121.967 kb on + strandat 121.968 kb on - strandat 122.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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118,469 + -0.6
118,470 - -0.2
118,492 + -0.3
118,493 - -1.7
118,493 - -0.8
118,541 + -0.0
118,559 + -0.8
118,559 + +0.7
118,560 - +0.1
118,560 - +0.7
118,560 - +0.7
118,560 - +0.4
118,561 + -3.0
118,561 + +1.3
118,563 + -0.7
118,563 + -0.6
118,563 + -1.1
118,564 - +1.8
118,564 - +0.1
118,564 - +2.0
118,564 - +0.8
118,564 - -1.3
118,564 - -0.8
118,564 - +1.7
118,613 - -2.7
118,662 - +1.0
118,662 - +0.0
118,972 - PS417_00590 0.10 -0.6
118,972 - PS417_00590 0.10 +0.3
119,126 - -2.2
119,133 + +1.5
119,134 - -0.5
119,193 - -1.2
119,193 - -1.0
119,205 + +2.2
119,206 - -0.4
119,206 - +0.3
119,295 + +6.3
119,295 + +5.9
119,296 - -2.7
119,296 - -1.1
119,298 - -3.2
119,303 + +4.1
119,303 + -0.7
119,303 + +1.0
119,304 - -2.5
119,304 - -1.5
119,368 + -2.0
119,439 - -1.8
119,439 - -0.3
119,439 - -3.6
119,439 - -3.4
119,447 + -2.7
119,448 - -2.2
119,547 + +0.5
119,578 - PS417_00595 0.12 +0.6
119,654 + PS417_00595 0.16 -2.7
119,654 + PS417_00595 0.16 -1.9
119,654 + PS417_00595 0.16 -2.5
119,655 - PS417_00595 0.16 -3.0
119,739 - PS417_00595 0.20 -4.3
119,739 - PS417_00595 0.20 -1.7
119,783 + PS417_00595 0.22 -5.5
119,784 - PS417_00595 0.23 -0.7
119,784 - PS417_00595 0.23 -1.3
119,784 - PS417_00595 0.23 -2.1
119,784 - PS417_00595 0.23 -1.1
119,797 - PS417_00595 0.23 -3.1
120,008 + PS417_00595 0.34 -0.3
120,008 + PS417_00595 0.34 -1.5
120,009 - PS417_00595 0.35 -0.5
120,009 - PS417_00595 0.35 -3.5
120,085 + +0.6
120,102 + PS417_00595 0.39 -3.6
120,119 + PS417_00595 0.40 -2.7
120,119 + PS417_00595 0.40 +0.6
120,119 + PS417_00595 0.40 +0.1
120,120 - PS417_00595 0.40 +0.9
120,120 - PS417_00595 0.40 -1.7
120,120 - PS417_00595 0.40 -0.1
120,153 - PS417_00595 0.42 -3.1
120,176 - PS417_00595 0.43 +0.1
120,208 - PS417_00595 0.45 +0.3
120,313 - PS417_00595 0.51 -2.2
120,382 - PS417_00595 0.54 -1.5
120,382 - PS417_00595 0.54 -0.8
120,388 + PS417_00595 0.55 -2.1
120,389 - PS417_00595 0.55 -2.5
120,453 + PS417_00595 0.58 -2.1
120,454 - PS417_00595 0.58 -1.1
120,475 + PS417_00595 0.59 -1.2
120,476 - PS417_00595 0.59 +0.1
120,566 - PS417_00595 0.64 -0.4
121,470 + PS417_00600 0.40 -1.3
121,471 - PS417_00600 0.40 -0.4
121,471 - PS417_00600 0.40 -0.1
121,471 - PS417_00600 0.40 -3.5
121,538 - PS417_00600 0.55 -1.2
121,538 - PS417_00600 0.55 -0.6
121,594 + +0.6
121,595 - PS417_00600 0.67 -1.0
121,643 + PS417_00600 0.78 +3.0
121,643 + PS417_00600 0.78 -1.8
121,643 + PS417_00600 0.78 -0.7
121,643 + PS417_00600 0.78 -0.4
121,643 + PS417_00600 0.78 +1.0
121,644 - PS417_00600 0.78 -1.2
121,644 - PS417_00600 0.78 -0.3
121,644 - PS417_00600 0.78 -0.7
121,691 + PS417_00600 0.88 -2.2
121,723 + -1.1
121,744 + -0.6
121,744 + +0.3
121,745 - +0.3
121,788 + -2.7
121,967 + -2.4
121,968 - +0.1
122,038 - -1.8

Or see this region's nucleotide sequence