Strain Fitness in Pseudomonas simiae WCS417 around PS417_03710

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03705 and PS417_03710 are separated by 101 nucleotidesPS417_03710 and PS417_03715 are separated by 150 nucleotides PS417_03705: PS417_03705 - 2-alkenal reductase, at 838,705 to 839,859 _03705 PS417_03710: PS417_03710 - metal-binding protein, at 839,961 to 840,719 _03710 PS417_03715: PS417_03715 - sulfate adenylyltransferase subunit 2, at 840,870 to 841,787 _03715 Position (kb) 839 840 841Strain fitness (log2 ratio) -2 -1 0 1at 839.510 kb on + strand, within PS417_03705at 839.652 kb on - strand, within PS417_03705at 839.713 kb on + strand, within PS417_03705at 839.713 kb on + strand, within PS417_03705at 839.713 kb on + strand, within PS417_03705at 839.916 kb on - strandat 839.916 kb on - strandat 839.918 kb on - strandat 839.918 kb on - strandat 839.918 kb on - strandat 839.918 kb on - strandat 839.949 kb on + strandat 839.950 kb on - strandat 839.950 kb on - strandat 839.961 kb on - strandat 840.162 kb on + strand, within PS417_03710at 840.507 kb on + strand, within PS417_03710at 840.507 kb on + strand, within PS417_03710at 840.508 kb on - strand, within PS417_03710at 840.543 kb on + strand, within PS417_03710at 840.543 kb on + strand, within PS417_03710at 840.544 kb on - strand, within PS417_03710at 840.643 kb on + strand, within PS417_03710at 840.643 kb on + strand, within PS417_03710at 840.643 kb on + strand, within PS417_03710at 840.643 kb on + strand, within PS417_03710at 840.644 kb on - strandat 840.758 kb on + strandat 840.758 kb on + strandat 840.773 kb on + strandat 840.807 kb on + strandat 840.807 kb on + strandat 840.808 kb on - strandat 840.808 kb on - strandat 840.845 kb on + strandat 840.845 kb on + strandat 840.845 kb on + strandat 840.845 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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839,510 + PS417_03705 0.70 +0.7
839,652 - PS417_03705 0.82 +1.2
839,713 + PS417_03705 0.87 -0.7
839,713 + PS417_03705 0.87 -0.0
839,713 + PS417_03705 0.87 +0.1
839,916 - +0.8
839,916 - +0.2
839,918 - -0.6
839,918 - -0.5
839,918 - +0.1
839,918 - -1.0
839,949 + +0.2
839,950 - +0.1
839,950 - +0.2
839,961 - -0.8
840,162 + PS417_03710 0.26 -0.0
840,507 + PS417_03710 0.72 +0.7
840,507 + PS417_03710 0.72 -0.5
840,508 - PS417_03710 0.72 +0.8
840,543 + PS417_03710 0.77 -0.6
840,543 + PS417_03710 0.77 -0.1
840,544 - PS417_03710 0.77 +1.0
840,643 + PS417_03710 0.90 -0.3
840,643 + PS417_03710 0.90 -1.3
840,643 + PS417_03710 0.90 -0.5
840,643 + PS417_03710 0.90 -0.8
840,644 - -0.1
840,758 + +0.0
840,758 + -1.5
840,773 + -1.8
840,807 + +1.0
840,807 + -0.1
840,808 - -0.3
840,808 - -0.7
840,845 + +0.2
840,845 + +0.3
840,845 + -0.6
840,845 + -0.3

Or see this region's nucleotide sequence