Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24625 and PS417_24630 are separated by 230 nucleotides PS417_24630 and PS417_24635 overlap by 8 nucleotides PS417_24635 and PS417_24640 are separated by 41 nucleotides
PS417_24625: PS417_24625 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 5,343,309 to 5,344,637
_24625
PS417_24630: PS417_24630 - ATP-binding protein, at 5,344,868 to 5,345,872
_24630
PS417_24635: PS417_24635 - rRNA maturation factor, at 5,345,865 to 5,346,323
_24635
PS417_24640: PS417_24640 - magnesium transporter, at 5,346,365 to 5,347,204
_24640
Position (kb)
5344
5345
5346 Strain fitness (log2 ratio)
-2
-1
0
1 at 5344.320 kb on + strand, within PS417_24625 at 5344.321 kb on - strand, within PS417_24625 at 5344.695 kb on + strand at 5344.695 kb on + strand at 5344.695 kb on + strand at 5344.695 kb on - strand at 5344.696 kb on - strand at 5344.706 kb on + strand at 5344.706 kb on + strand at 5344.706 kb on + strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.788 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.793 kb on - strand at 5344.793 kb on - strand at 5345.123 kb on + strand, within PS417_24630 at 5345.453 kb on + strand, within PS417_24630 at 5345.537 kb on + strand, within PS417_24630 at 5345.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,344,320 + PS417_24625 0.76 +0.5 5,344,321 - PS417_24625 0.76 -0.7 5,344,695 + -0.3 5,344,695 + -0.5 5,344,695 + -2.3 5,344,695 - -0.1 5,344,696 - -0.0 5,344,706 + -0.4 5,344,706 + -0.5 5,344,706 + +1.1 5,344,707 - -0.2 5,344,707 - +0.3 5,344,707 - +0.4 5,344,707 - +0.1 5,344,707 - -0.0 5,344,788 + +0.1 5,344,792 + +0.1 5,344,792 + -0.1 5,344,792 + +0.3 5,344,792 + -0.7 5,344,793 - -0.1 5,344,793 - +0.0 5,345,123 + PS417_24630 0.25 -0.1 5,345,453 + PS417_24630 0.58 -1.2 5,345,537 + PS417_24630 0.67 -1.4 5,345,813 + +0.1
Or see this region's nucleotide sequence