Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22295 and PS417_22300 are separated by 263 nucleotides PS417_22300 and PS417_22305 are separated by 68 nucleotides PS417_22305 and PS417_22310 are separated by 37 nucleotides
PS417_22295: PS417_22295 - chemotaxis protein CheY, at 4,828,736 to 4,829,413
_22295
PS417_22300: PS417_22300 - LTXXQ domain protein, at 4,829,677 to 4,830,141
_22300
PS417_22305: PS417_22305 - histidine kinase, at 4,830,210 to 4,831,553
_22305
PS417_22310: PS417_22310 - CAIB/BAIF family CoA transferase, at 4,831,591 to 4,832,940
_22310
Position (kb) 4830
4831
4832 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4829.400 kb on - strand at 4829.400 kb on - strand at 4829.402 kb on + strand at 4829.402 kb on + strand at 4829.403 kb on - strand at 4829.403 kb on - strand at 4829.403 kb on - strand at 4829.552 kb on + strand at 4829.634 kb on + strand at 4829.634 kb on + strand at 4829.933 kb on - strand, within PS417_22300 at 4830.139 kb on + strand at 4830.140 kb on - strand at 4830.293 kb on + strand at 4830.293 kb on + strand at 4830.294 kb on - strand at 4830.427 kb on - strand, within PS417_22305 at 4830.567 kb on + strand, within PS417_22305 at 4830.606 kb on + strand, within PS417_22305 at 4830.606 kb on + strand, within PS417_22305 at 4830.606 kb on + strand, within PS417_22305 at 4830.783 kb on + strand, within PS417_22305 at 4830.784 kb on - strand, within PS417_22305 at 4830.951 kb on - strand, within PS417_22305 at 4831.559 kb on + strand at 4831.559 kb on + strand at 4831.559 kb on + strand at 4831.559 kb on + strand at 4831.560 kb on - strand at 4831.560 kb on - strand at 4831.560 kb on - strand at 4831.560 kb on - strand at 4831.981 kb on + strand, within PS417_22310 at 4831.981 kb on + strand, within PS417_22310 at 4831.981 kb on + strand, within PS417_22310 at 4831.981 kb on + strand, within PS417_22310 at 4831.982 kb on - strand, within PS417_22310 at 4831.982 kb on - strand, within PS417_22310 at 4831.982 kb on - strand, within PS417_22310 at 4832.192 kb on + strand, within PS417_22310 at 4832.192 kb on + strand, within PS417_22310 at 4832.192 kb on + strand, within PS417_22310 at 4832.300 kb on + strand, within PS417_22310 at 4832.444 kb on - strand, within PS417_22310 at 4832.526 kb on + strand, within PS417_22310
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 4,829,400 - +0.2 4,829,400 - +0.2 4,829,402 + -0.0 4,829,402 + +0.1 4,829,403 - -0.3 4,829,403 - -1.7 4,829,403 - +1.8 4,829,552 + -0.3 4,829,634 + +0.7 4,829,634 + -0.1 4,829,933 - PS417_22300 0.55 -1.2 4,830,139 + -0.1 4,830,140 - -0.0 4,830,293 + +0.3 4,830,293 + +0.3 4,830,294 - +0.9 4,830,427 - PS417_22305 0.16 -1.9 4,830,567 + PS417_22305 0.27 +0.2 4,830,606 + PS417_22305 0.29 +2.7 4,830,606 + PS417_22305 0.29 -0.1 4,830,606 + PS417_22305 0.29 +0.9 4,830,783 + PS417_22305 0.43 +0.2 4,830,784 - PS417_22305 0.43 +0.4 4,830,951 - PS417_22305 0.55 -2.3 4,831,559 + -0.1 4,831,559 + -0.0 4,831,559 + +0.0 4,831,559 + -0.1 4,831,560 - +0.2 4,831,560 - +0.1 4,831,560 - +0.6 4,831,560 - +0.8 4,831,981 + PS417_22310 0.29 +0.3 4,831,981 + PS417_22310 0.29 -0.9 4,831,981 + PS417_22310 0.29 -1.5 4,831,981 + PS417_22310 0.29 -0.5 4,831,982 - PS417_22310 0.29 +0.5 4,831,982 - PS417_22310 0.29 -0.4 4,831,982 - PS417_22310 0.29 +0.1 4,832,192 + PS417_22310 0.45 -1.0 4,832,192 + PS417_22310 0.45 +0.3 4,832,192 + PS417_22310 0.45 +0.1 4,832,300 + PS417_22310 0.53 -0.8 4,832,444 - PS417_22310 0.63 -0.3 4,832,526 + PS417_22310 0.69 +0.9
Or see this region's nucleotide sequence