Strain Fitness in Pseudomonas simiae WCS417 around PS417_24630

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24625 and PS417_24630 are separated by 230 nucleotidesPS417_24630 and PS417_24635 overlap by 8 nucleotidesPS417_24635 and PS417_24640 are separated by 41 nucleotides PS417_24625: PS417_24625 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 5,343,309 to 5,344,637 _24625 PS417_24630: PS417_24630 - ATP-binding protein, at 5,344,868 to 5,345,872 _24630 PS417_24635: PS417_24635 - rRNA maturation factor, at 5,345,865 to 5,346,323 _24635 PS417_24640: PS417_24640 - magnesium transporter, at 5,346,365 to 5,347,204 _24640 Position (kb) 5344 5345 5346Strain fitness (log2 ratio) -2 -1 0 1at 5344.320 kb on + strand, within PS417_24625at 5344.321 kb on - strand, within PS417_24625at 5344.695 kb on + strandat 5344.695 kb on + strandat 5344.695 kb on + strandat 5344.695 kb on - strandat 5344.696 kb on - strandat 5344.706 kb on + strandat 5344.706 kb on + strandat 5344.706 kb on + strandat 5344.707 kb on - strandat 5344.707 kb on - strandat 5344.707 kb on - strandat 5344.707 kb on - strandat 5344.707 kb on - strandat 5344.788 kb on + strandat 5344.792 kb on + strandat 5344.792 kb on + strandat 5344.792 kb on + strandat 5344.792 kb on + strandat 5344.793 kb on - strandat 5344.793 kb on - strandat 5345.123 kb on + strand, within PS417_24630at 5345.453 kb on + strand, within PS417_24630at 5345.537 kb on + strand, within PS417_24630at 5345.813 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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5,344,320 + PS417_24625 0.76 -0.2
5,344,321 - PS417_24625 0.76 -0.4
5,344,695 + -0.7
5,344,695 + +0.0
5,344,695 + -0.6
5,344,695 - +0.1
5,344,696 - +0.6
5,344,706 + +0.3
5,344,706 + -0.7
5,344,706 + +0.4
5,344,707 - -1.0
5,344,707 - +0.9
5,344,707 - +0.1
5,344,707 - +0.4
5,344,707 - +0.1
5,344,788 + +0.2
5,344,792 + +0.1
5,344,792 + -0.5
5,344,792 + +0.8
5,344,792 + -0.4
5,344,793 - -0.8
5,344,793 - +0.7
5,345,123 + PS417_24630 0.25 -0.3
5,345,453 + PS417_24630 0.58 -0.9
5,345,537 + PS417_24630 0.67 -2.7
5,345,813 + -0.5

Or see this region's nucleotide sequence